Analysis of interatomic Contacts of Structural Units in PDB entry:
5FGO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FGO entry

There are 6 chains in PDB entry 5FGO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 194LYS 255
B
 GLY 191LYS 255
C
 PRO 194LYS 254
D
 PHE 189MSE 253
E
 ASP 192LYS 255
F
 ASP 192LYS 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5FGO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
238 252Right-handed alpha
Helix 2
AA2
B
238 252Right-handed alpha
Helix 3
AA3
C
238 253Right-handed alpha
Helix 4
AA4
D
238 250Right-handed alpha
Helix 5
AA5
E
238 253Right-handed alpha
Helix 6
AA6
F
238 254Right-handed alpha
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There are 6 sheets in PDB entry 5FGO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 201first strand
Strand 2
A
204 212anti-parallel
Strand 3
A
217 225anti-parallel
Strand 4
A
228 235anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 201first strand
Strand 2
B
204 213anti-parallel
Strand 3
B
216 225anti-parallel
Strand 4
B
228 235anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
198 201first strand
Strand 2
C
204 212anti-parallel
Strand 3
C
217 225anti-parallel
Strand 4
C
228 235anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
197 201first strand
Strand 2
D
204 213anti-parallel
Strand 3
D
216 225anti-parallel
Strand 4
D
228 235anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
197 201first strand
Strand 2
E
204 212anti-parallel
Strand 3
E
217 225anti-parallel
Strand 4
E
228 235anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
197 201first strand
Strand 2
F
204 212anti-parallel
Strand 3
F
217 225anti-parallel
Strand 4
F
228 235anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il