Analysis of interatomic Contacts of Structural Units in PDB entry:
5FGU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FGU entry

There are 2 chains in PDB entry 5FGU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3PHE 64
A
 VAL 68THR 1385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5FGU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed 310
Helix 2
AA2
A
56 61Right-handed 310
Helix 3
AA3
A
68 72Right-handed 310
Helix 4
AA4
A
75 81Right-handed 310
Helix 5
AA5
A
82 87Right-handed alpha
Helix 6
AA6
A
156 159Right-handed 310
Helix 7
AA7
A
1064 1068Right-handed 310
Helix 8
AA8
A
1076 1081Right-handed alpha
Helix 9
AA9
A
1113 1121Right-handed alpha
Helix 10
AB1
A
1149 1156Right-handed alpha
Helix 11
AB2
A
1191 1195Right-handed 310
Helix 12
AB3
A
1199 1201Right-handed 310
Helix 13
AB4
A
1208 1213Right-handed alpha
Helix 14
AB5
A
1219 1235Right-handed alpha
Helix 15
AB6
A
1355 1359Right-handed 310
Helix 16
AB7
A
1372 1379Right-handed alpha
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There are 7 sheets in PDB entry 5FGU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 22first strand
Strand 2
A
25 36anti-parallel
Strand 3
A
41 48anti-parallel
Strand 4
A
217 227anti-parallel
Strand 5
A
199 208anti-parallel
Strand 6
A
148 155anti-parallel
Strand 7
A
160 170anti-parallel
Strand 8
A
176 187anti-parallel
Strand 9
A
92 100anti-parallel
Strand 10
A
105 115anti-parallel
Strand 11
A
118 128anti-parallel
Strand 12
A
11 22parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1072 1075first strand
Strand 2
A
1088 1091anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1095 1096first strand
Strand 2
A
1108 1112anti-parallel
Strand 3
A
1240 1247anti-parallel
Strand 4
A
1257 1264anti-parallel
Strand 5
A
1270 1276anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1147 1148first strand
Strand 2
A
1137 1141anti-parallel
Strand 3
A
1160 1164anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1168 1172first strand
Strand 2
A
1178 1182anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1184 1188first strand
Strand 2
A
1203 1207anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1351 1352first strand
Strand 2
A
1382 1383parallel
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