Analysis of interatomic Contacts of Structural Units in PDB entry:
5FGW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FGW entry

There are 4 chains in PDB entry 5FGW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 46	SER 294
B	TRP 46	SER 294
C	TRP 46	SER 294
D	ASN 45	SER 294

There are 32 helices in PDB entry 5FGW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	68	Right-handed 310
Helix 2	AA2	A	76	81	Right-handed alpha
Helix 3	AA3	A	113	123	Right-handed alpha
Helix 4	AA4	A	149	156	Right-handed alpha
Helix 5	AA5	A	191	195	Right-handed 310
Helix 6	AA6	A	199	201	Right-handed 310
Helix 7	AA7	A	208	213	Right-handed alpha
Helix 8	AA8	A	220	235	Right-handed alpha
Helix 9	AA9	B	64	68	Right-handed 310
Helix 10	AB1	B	76	81	Right-handed alpha
Helix 11	AB2	B	113	122	Right-handed alpha
Helix 12	AB3	B	149	156	Right-handed alpha
Helix 13	AB4	B	191	195	Right-handed 310
Helix 14	AB5	B	199	201	Right-handed 310
Helix 15	AB6	B	208	213	Right-handed alpha
Helix 16	AB7	B	219	235	Right-handed alpha
Helix 17	AB8	C	64	68	Right-handed 310
Helix 18	AB9	C	76	81	Right-handed alpha
Helix 19	AC1	C	113	123	Right-handed alpha
Helix 20	AC2	C	149	156	Right-handed alpha
Helix 21	AC3	C	191	195	Right-handed 310
Helix 22	AC4	C	199	201	Right-handed 310
Helix 23	AC5	C	208	213	Right-handed alpha
Helix 24	AC6	C	219	235	Right-handed alpha
Helix 25	AC7	D	64	68	Right-handed 310
Helix 26	AC8	D	76	80	Right-handed alpha
Helix 27	AC9	D	113	122	Right-handed alpha
Helix 28	AD1	D	149	156	Right-handed alpha
Helix 29	AD2	D	191	195	Right-handed 310
Helix 30	AD3	D	199	201	Right-handed 310
Helix 31	AD4	D	208	213	Right-handed alpha
Helix 32	AD5	D	219	235	Right-handed alpha

There are 20 sheets in PDB entry 5FGW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	59	first strand
Strand 2	A	270	276	anti-parallel
Strand 3	A	257	264	anti-parallel
Strand 4	A	240	247	anti-parallel
Strand 5	A	108	112	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	88	91	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	148	first strand
Strand 2	A	137	141	anti-parallel
Strand 3	A	160	164	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	169	first strand
Strand 2	A	181	182	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	188	first strand
Strand 2	A	203	207	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	59	first strand
Strand 2	B	270	276	anti-parallel
Strand 3	B	257	264	anti-parallel
Strand 4	B	240	247	anti-parallel
Strand 5	B	108	112	anti-parallel
Strand 6	B	95	96	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	75	first strand
Strand 2	B	88	91	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	148	first strand
Strand 2	B	137	141	anti-parallel
Strand 3	B	160	164	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	172	first strand
Strand 2	B	178	182	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	188	first strand
Strand 2	B	203	207	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	59	first strand
Strand 2	C	270	276	anti-parallel
Strand 3	C	257	264	anti-parallel
Strand 4	C	240	247	anti-parallel
Strand 5	C	108	112	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	75	first strand
Strand 2	C	88	91	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	148	first strand
Strand 2	C	137	141	anti-parallel
Strand 3	C	160	164	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	169	first strand
Strand 2	C	181	182	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	188	first strand
Strand 2	C	203	207	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	59	first strand
Strand 2	D	270	276	anti-parallel
Strand 3	D	257	264	anti-parallel
Strand 4	D	240	247	anti-parallel
Strand 5	D	108	112	anti-parallel
Strand 6	D	95	96	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	75	first strand
Strand 2	D	88	91	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	148	first strand
Strand 2	D	137	141	anti-parallel
Strand 3	D	160	164	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	172	first strand
Strand 2	D	178	182	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	188	first strand
Strand 2	D	203	207	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FGW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FGW