Analysis of interatomic Contacts of Structural Units in PDB entry:
5FHR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FHR entry

There are 2 chains in PDB entry 5FHR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 46PRO 258
B
 ASP 46PRO 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 5FHR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 60Right-handed alpha
Helix 2
AA2
A
64 79Right-handed alpha
Helix 3
AA3
A
85 101Right-handed alpha
Helix 4
AA4
A
113 121Right-handed alpha
Helix 5
AA5
A
135 150Right-handed alpha
Helix 6
AA6
A
161 166Right-handed alpha
Helix 7
AA7
A
168 174Right-handed alpha
Helix 8
AA8
A
186 188Right-handed 310
Helix 9
AA9
A
189 200Right-handed alpha
Helix 10
AB1
A
219 229Right-handed alpha
Helix 11
AB2
B
47 60Right-handed alpha
Helix 12
AB3
B
64 79Right-handed alpha
Helix 13
AB4
B
86 101Right-handed alpha
Helix 14
AB5
B
113 121Right-handed alpha
Helix 15
AB6
B
135 150Right-handed alpha
Helix 16
AB7
B
151 153Right-handed 310
Helix 17
AB8
B
161 166Right-handed alpha
Helix 18
AB9
B
168 174Right-handed alpha
Helix 19
AC1
B
186 188Right-handed 310
Helix 20
AC2
B
189 200Right-handed alpha
Helix 21
AC3
B
219 229Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5FHR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 159first strand
Strand 2
A
128 133parallel
Strand 3
A
104 108parallel
Strand 4
A
180 183parallel
Strand 5
A
208 211parallel
Strand 6
B
247 255anti-parallel
Strand 7
A
232 240anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 158first strand
Strand 2
B
128 132parallel
Strand 3
B
104 108parallel
Strand 4
B
178 183parallel
Strand 5
B
203 211parallel
Strand 6
A
247 255anti-parallel
Strand 7
B
232 240anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il