Analysis of interatomic Contacts of Structural Units in PDB entry:
5FI1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FI1 entry

There are 2 chains in PDB entry 5FI1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2SER 396
B
 PHE 0PRO 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5FI1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-2 75Right-handed alpha
Helix 2
AA2
A
75 82Right-handed alpha
Helix 3
AA3
A
82 89Right-handed alpha
Helix 4
AA4
A
92 101Right-handed alpha
Helix 5
AA5
A
102 121Right-handed alpha
Helix 6
AA6
A
131 138Right-handed alpha
Helix 7
AA7
A
139 143Right-handed 310
Helix 8
AA8
A
144 165Right-handed alpha
Helix 9
AA9
A
165 179Right-handed alpha
Helix 10
AB1
A
187 199Right-handed alpha
Helix 11
AB2
A
201 213Right-handed alpha
Helix 12
AB3
A
219 256Right-handed alpha
Helix 13
AB4
A
264 269Right-handed alpha
Helix 14
AB5
A
376 396Right-handed alpha
Helix 15
AB6
B
15 25Right-handed alpha
Helix 16
AB7
B
67 71Right-handed 310
Helix 17
AB8
B
86 96Right-handed alpha
Helix 18
AB9
B
96 105Right-handed alpha
Helix 19
AC1
B
116 120Right-handed 310
Helix 20
AC2
B
122 132Right-handed alpha
Helix 21
AC3
B
138 149Right-handed alpha
Helix 22
AC4
B
164 177Right-handed alpha
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There are 2 sheets in PDB entry 5FI1. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 258first strand
Strand 2
A
325 332parallel
Strand 3
A
297 303anti-parallel
Strand 4
A
285 294anti-parallel
Strand 5
A
272 282anti-parallel
Strand 6
A
368 373anti-parallel
Strand 7
A
358 363anti-parallel
Strand 8
A
336 341anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 46first strand
Strand 2
B
49 57anti-parallel
Strand 3
B
3 10parallel
Strand 4
B
77 83parallel
Strand 5
B
110 115parallel
Strand 6
B
154 156parallel
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