Analysis of interatomic Contacts of Structural Units in PDB entry:
5FI9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FI9 entry

There are 2 chains in PDB entry 5FI9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 82MET 609
B
 LYS 82PRO 610
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 5FI9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
86 102Right-handed alpha
Helix 2
AA2
A
106 122Right-handed alpha
Helix 3
AA3
A
125 137Right-handed alpha
Helix 4
AA4
A
139 146Right-handed alpha
Helix 5
AA5
A
150 160Right-handed alpha
Helix 6
AA6
A
251 261Right-handed alpha
Helix 7
AA7
A
262 266Right-handed 310
Helix 8
AA8
A
281 285Right-handed 310
Helix 9
AA9
A
286 306Right-handed alpha
Helix 10
AB1
A
336 347Right-handed alpha
Helix 11
AB2
A
352 363Right-handed alpha
Helix 12
AB3
A
379 384Right-handed 310
Helix 13
AB4
A
387 392Right-handed 310
Helix 14
AB5
A
396 398Right-handed 310
Helix 15
AB6
A
399 415Right-handed alpha
Helix 16
AB7
A
425 429Right-handed 310
Helix 17
AB8
A
430 444Right-handed alpha
Helix 18
AB9
A
518 523Right-handed alpha
Helix 19
AC1
A
537 542Right-handed alpha
Helix 20
AC2
A
547 561Right-handed alpha
Helix 21
AC3
A
561 573Right-handed alpha
Helix 22
AC4
A
583 595Right-handed alpha
Helix 23
AC5
A
601 606Right-handed 310
Helix 24
AC6
B
86 99Right-handed alpha
Helix 25
AC7
B
107 121Right-handed alpha
Helix 26
AC8
B
125 137Right-handed alpha
Helix 27
AC9
B
139 147Right-handed alpha
Helix 28
AD1
B
150 159Right-handed alpha
Helix 29
AD2
B
160 164Right-handed 310
Helix 30
AD3
B
251 261Right-handed alpha
Helix 31
AD4
B
281 285Right-handed 310
Helix 32
AD5
B
286 306Right-handed alpha
Helix 33
AD6
B
336 347Right-handed alpha
Helix 34
AD7
B
352 363Right-handed alpha
Helix 35
AD8
B
379 383Right-handed 310
Helix 36
AD9
B
387 392Right-handed 310
Helix 37
AE1
B
396 398Right-handed 310
Helix 38
AE2
B
399 415Right-handed alpha
Helix 39
AE3
B
425 429Right-handed 310
Helix 40
AE4
B
430 444Right-handed alpha
Helix 41
AE5
B
518 523Right-handed alpha
Helix 42
AE6
B
537 542Right-handed alpha
Helix 43
AE7
B
547 561Right-handed alpha
Helix 44
AE8
B
561 573Right-handed alpha
Helix 45
AE9
B
583 595Right-handed alpha
Helix 46
AF1
B
601 609Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 5FI9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 312first strand
Strand 2
A
270 273parallel
Strand 3
A
196 202parallel
Strand 4
A
492 499anti-parallel
Strand 5
A
509 517anti-parallel
Strand 6
A
531 536anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 370first strand
Strand 2
A
373 377anti-parallel
Strand 3
A
417 421parallel
Strand 4
A
448 453parallel
Strand 5
A
473 479parallel
Strand 6
A
460 465anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 312first strand
Strand 2
B
270 273parallel
Strand 3
B
196 202parallel
Strand 4
B
492 499anti-parallel
Strand 5
B
509 517anti-parallel
Strand 6
B
531 536anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
365 370first strand
Strand 2
B
373 377anti-parallel
Strand 3
B
417 421parallel
Strand 4
B
448 453parallel
Strand 5
B
473 479parallel
Strand 6
B
460 465anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il