Analysis of interatomic Contacts of Structural Units in PDB entry:
5FIF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FIF entry

There are 6 chains in PDB entry 5FIF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 19	TRP 536
B	ASP 18	TRP 536
C	ARG 17	TRP 536
D	GLU -6	TRP 536
E	ALA 21	TRP 536
F	ASP 18	TRP 536

There are158 helices in PDB entry 5FIF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	25	Right-handed 310
Helix 2	AA2	A	26	35	Right-handed alpha
Helix 3	AA3	A	41	51	Right-handed alpha
Helix 4	AA4	A	55	64	Right-handed alpha
Helix 5	AA5	A	85	93	Right-handed alpha
Helix 6	AA6	A	94	96	Right-handed 310
Helix 7	AA7	A	125	129	Right-handed 310
Helix 8	AA8	A	131	149	Right-handed alpha
Helix 9	AA9	A	177	185	Right-handed alpha
Helix 10	AB1	A	201	209	Right-handed alpha
Helix 11	AB2	A	225	232	Right-handed alpha
Helix 12	AB3	A	238	242	Right-handed 310
Helix 13	AB4	A	244	251	Right-handed alpha
Helix 14	AB5	A	260	274	Right-handed alpha
Helix 15	AB6	A	286	292	Right-handed 310
Helix 16	AB7	A	303	312	Right-handed alpha
Helix 17	AB8	A	349	353	Right-handed 310
Helix 18	AB9	A	355	372	Right-handed alpha
Helix 19	AC1	A	388	393	Right-handed alpha
Helix 20	AC2	A	395	408	Right-handed alpha
Helix 21	AC3	A	424	431	Right-handed alpha
Helix 22	AC4	A	471	490	Right-handed alpha
Helix 23	AC5	A	491	498	Right-handed alpha
Helix 24	AC6	A	506	508	Right-handed 310
Helix 25	AC7	A	509	520	Right-handed alpha
Helix 26	AC8	B	23	25	Right-handed 310
Helix 27	AC9	B	26	35	Right-handed alpha
Helix 28	AD1	B	41	51	Right-handed alpha
Helix 29	AD2	B	55	64	Right-handed alpha
Helix 30	AD3	B	85	93	Right-handed alpha
Helix 31	AD4	B	94	96	Right-handed 310
Helix 32	AD5	B	125	129	Right-handed 310
Helix 33	AD6	B	131	149	Right-handed alpha
Helix 34	AD7	B	177	185	Right-handed alpha
Helix 35	AD8	B	201	209	Right-handed alpha
Helix 36	AD9	B	225	231	Right-handed alpha
Helix 37	AE1	B	244	251	Right-handed alpha
Helix 38	AE2	B	260	274	Right-handed alpha
Helix 39	AE3	B	286	293	Right-handed 310
Helix 40	AE4	B	303	312	Right-handed alpha
Helix 41	AE5	B	349	353	Right-handed 310
Helix 42	AE6	B	355	372	Right-handed alpha
Helix 43	AE7	B	388	394	Right-handed alpha
Helix 44	AE8	B	395	408	Right-handed alpha
Helix 45	AE9	B	424	431	Right-handed alpha
Helix 46	AF1	B	453	462	Right-handed alpha
Helix 47	AF2	B	471	490	Right-handed alpha
Helix 48	AF3	B	491	498	Right-handed alpha
Helix 49	AF4	B	506	508	Right-handed 310
Helix 50	AF5	B	509	520	Right-handed alpha
Helix 51	AF6	C	23	25	Right-handed 310
Helix 52	AF7	C	26	35	Right-handed alpha
Helix 53	AF8	C	36	40	Right-handed 310
Helix 54	AF9	C	41	51	Right-handed alpha
Helix 55	AG1	C	55	64	Right-handed alpha
Helix 56	AG2	C	85	93	Right-handed alpha
Helix 57	AG3	C	94	96	Right-handed 310
Helix 58	AG4	C	125	129	Right-handed 310
Helix 59	AG5	C	131	149	Right-handed alpha
Helix 60	AG6	C	177	185	Right-handed alpha
Helix 61	AG7	C	201	209	Right-handed alpha
Helix 62	AG8	C	225	230	Right-handed alpha
Helix 63	AG9	C	234	240	Right-handed alpha
Helix 64	AH1	C	244	251	Right-handed alpha
Helix 65	AH2	C	260	274	Right-handed alpha
Helix 66	AH3	C	286	292	Right-handed 310
Helix 67	AH4	C	303	312	Right-handed alpha
Helix 68	AH5	C	349	353	Right-handed 310
Helix 69	AH6	C	355	372	Right-handed alpha
Helix 70	AH7	C	388	393	Right-handed alpha
Helix 71	AH8	C	395	408	Right-handed alpha
Helix 72	AH9	C	424	431	Right-handed alpha
Helix 73	AI1	C	453	461	Right-handed alpha
Helix 74	AI2	C	476	490	Right-handed alpha
Helix 75	AI3	C	491	498	Right-handed alpha
Helix 76	AI4	C	506	508	Right-handed 310
Helix 77	AI5	C	509	520	Right-handed alpha
Helix 78	AI6	D	-5	4	Right-handed alpha
Helix 79	AI7	D	23	25	Right-handed 310
Helix 80	AI8	D	26	35	Right-handed alpha
Helix 81	AI9	D	41	51	Right-handed alpha
Helix 82	AJ1	D	55	64	Right-handed alpha
Helix 83	AJ2	D	85	93	Right-handed alpha
Helix 84	AJ3	D	94	96	Right-handed 310
Helix 85	AJ4	D	125	129	Right-handed 310
Helix 86	AJ5	D	131	149	Right-handed alpha
Helix 87	AJ6	D	177	185	Right-handed alpha
Helix 88	AJ7	D	201	209	Right-handed alpha
Helix 89	AJ8	D	225	231	Right-handed alpha
Helix 90	AJ9	D	238	243	Right-handed alpha
Helix 91	AK1	D	244	251	Right-handed alpha
Helix 92	AK2	D	260	274	Right-handed alpha
Helix 93	AK3	D	286	292	Right-handed 310
Helix 94	AK4	D	303	312	Right-handed alpha
Helix 95	AK5	D	349	353	Right-handed 310
Helix 96	AK6	D	355	372	Right-handed alpha
Helix 97	AK7	D	388	394	Right-handed alpha
Helix 98	AK8	D	395	408	Right-handed alpha
Helix 99	AK9	D	424	431	Right-handed alpha
Helix 100	AL1	D	453	462	Right-handed alpha
Helix 101	AL2	D	462	468	Right-handed alpha
Helix 102	AL3	D	471	490	Right-handed alpha
Helix 103	AL4	D	491	498	Right-handed alpha
Helix 104	AL5	D	506	508	Right-handed 310
Helix 105	AL6	D	509	520	Right-handed alpha
Helix 106	AL7	E	23	25	Right-handed 310
Helix 107	AL8	E	26	35	Right-handed alpha
Helix 108	AL9	E	36	40	Right-handed 310
Helix 109	AM1	E	41	51	Right-handed alpha
Helix 110	AM2	E	55	64	Right-handed alpha
Helix 111	AM3	E	85	93	Right-handed alpha
Helix 112	AM4	E	94	96	Right-handed 310
Helix 113	AM5	E	125	129	Right-handed 310
Helix 114	AM6	E	131	149	Right-handed alpha
Helix 115	AM7	E	177	185	Right-handed alpha
Helix 116	AM8	E	201	209	Right-handed alpha
Helix 117	AM9	E	225	232	Right-handed alpha
Helix 118	AN1	E	238	242	Right-handed 310
Helix 119	AN2	E	244	251	Right-handed alpha
Helix 120	AN3	E	260	274	Right-handed alpha
Helix 121	AN4	E	286	292	Right-handed 310
Helix 122	AN5	E	303	312	Right-handed alpha
Helix 123	AN6	E	349	353	Right-handed 310
Helix 124	AN7	E	355	372	Right-handed alpha
Helix 125	AN8	E	388	394	Right-handed alpha
Helix 126	AN9	E	395	408	Right-handed alpha
Helix 127	AO1	E	424	431	Right-handed alpha
Helix 128	AO2	E	453	462	Right-handed alpha
Helix 129	AO3	E	477	490	Right-handed alpha
Helix 130	AO4	E	491	498	Right-handed alpha
Helix 131	AO5	E	506	508	Right-handed 310
Helix 132	AO6	E	509	520	Right-handed alpha
Helix 133	AO7	F	23	25	Right-handed 310
Helix 134	AO8	F	26	35	Right-handed alpha
Helix 135	AO9	F	41	51	Right-handed alpha
Helix 136	AP1	F	55	64	Right-handed alpha
Helix 137	AP2	F	85	93	Right-handed alpha
Helix 138	AP3	F	94	96	Right-handed 310
Helix 139	AP4	F	125	129	Right-handed 310
Helix 140	AP5	F	131	149	Right-handed alpha
Helix 141	AP6	F	177	185	Right-handed alpha
Helix 142	AP7	F	201	209	Right-handed alpha
Helix 143	AP8	F	225	231	Right-handed alpha
Helix 144	AP9	F	238	242	Right-handed 310
Helix 145	AQ1	F	244	251	Right-handed alpha
Helix 146	AQ2	F	260	274	Right-handed alpha
Helix 147	AQ3	F	286	293	Right-handed 310
Helix 148	AQ4	F	303	312	Right-handed alpha
Helix 149	AQ5	F	349	353	Right-handed 310
Helix 150	AQ6	F	355	372	Right-handed alpha
Helix 151	AQ7	F	388	394	Right-handed alpha
Helix 152	AQ8	F	395	408	Right-handed alpha
Helix 153	AQ9	F	424	431	Right-handed alpha
Helix 154	AR1	F	453	463	Right-handed alpha
Helix 155	AR2	F	478	490	Right-handed alpha
Helix 156	AR3	F	491	498	Right-handed alpha
Helix 157	AR4	F	506	508	Right-handed 310
Helix 158	AR5	F	509	520	Right-handed alpha

There are 24 sheets in PDB entry 5FIF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	72	first strand
Strand 2	A	98	104	anti-parallel
Strand 3	A	115	121	anti-parallel
Strand 4	A	152	155	parallel
Strand 5	A	191	195	parallel
Strand 6	A	212	216	parallel
Strand 7	A	256	258	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	200	first strand
Strand 2	A	220	222	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	320	first strand
Strand 2	A	328	335	anti-parallel
Strand 3	A	338	345	anti-parallel
Strand 4	A	376	382	parallel
Strand 5	A	414	423	parallel
Strand 6	A	448	450	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	320	first strand
Strand 2	A	328	335	anti-parallel
Strand 3	A	338	345	anti-parallel
Strand 4	A	376	382	parallel
Strand 5	A	414	423	parallel
Strand 6	A	440	443	parallel
Strand 7	A	503	504	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	72	first strand
Strand 2	B	98	104	anti-parallel
Strand 3	B	115	121	anti-parallel
Strand 4	B	152	155	parallel
Strand 5	B	191	195	parallel
Strand 6	B	212	216	parallel
Strand 7	B	256	258	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	200	first strand
Strand 2	B	220	222	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	320	first strand
Strand 2	B	328	335	anti-parallel
Strand 3	B	338	345	anti-parallel
Strand 4	B	376	382	parallel
Strand 5	B	414	423	parallel
Strand 6	B	448	450	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	320	first strand
Strand 2	B	328	335	anti-parallel
Strand 3	B	338	345	anti-parallel
Strand 4	B	376	382	parallel
Strand 5	B	414	423	parallel
Strand 6	B	440	443	parallel
Strand 7	B	503	504	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	72	first strand
Strand 2	C	98	104	anti-parallel
Strand 3	C	115	121	anti-parallel
Strand 4	C	152	155	parallel
Strand 5	C	191	195	parallel
Strand 6	C	212	216	parallel
Strand 7	C	256	258	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	200	first strand
Strand 2	C	220	222	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	320	first strand
Strand 2	C	328	335	anti-parallel
Strand 3	C	338	345	anti-parallel
Strand 4	C	376	382	parallel
Strand 5	C	414	423	parallel
Strand 6	C	448	450	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	320	first strand
Strand 2	C	328	335	anti-parallel
Strand 3	C	338	345	anti-parallel
Strand 4	C	376	382	parallel
Strand 5	C	414	423	parallel
Strand 6	C	440	443	parallel
Strand 7	C	503	504	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	72	first strand
Strand 2	D	98	104	anti-parallel
Strand 3	D	115	121	anti-parallel
Strand 4	D	152	155	parallel
Strand 5	D	191	195	parallel
Strand 6	D	212	216	parallel
Strand 7	D	256	258	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	200	first strand
Strand 2	D	220	222	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	320	first strand
Strand 2	D	328	335	anti-parallel
Strand 3	D	338	345	anti-parallel
Strand 4	D	376	382	parallel
Strand 5	D	414	423	parallel
Strand 6	D	448	450	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	320	first strand
Strand 2	D	328	335	anti-parallel
Strand 3	D	338	345	anti-parallel
Strand 4	D	376	382	parallel
Strand 5	D	414	423	parallel
Strand 6	D	440	443	parallel
Strand 7	D	503	504	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	71	first strand
Strand 2	E	98	104	anti-parallel
Strand 3	E	115	121	anti-parallel
Strand 4	E	152	155	parallel
Strand 5	E	191	195	parallel
Strand 6	E	212	216	parallel
Strand 7	E	256	258	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	198	200	first strand
Strand 2	E	220	222	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	318	320	first strand
Strand 2	E	328	335	anti-parallel
Strand 3	E	338	345	anti-parallel
Strand 4	E	376	382	parallel
Strand 5	E	414	423	parallel
Strand 6	E	448	450	parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	318	320	first strand
Strand 2	E	328	335	anti-parallel
Strand 3	E	338	345	anti-parallel
Strand 4	E	376	382	parallel
Strand 5	E	414	423	parallel
Strand 6	E	440	443	parallel
Strand 7	E	503	504	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	70	72	first strand
Strand 2	F	98	104	anti-parallel
Strand 3	F	115	121	anti-parallel
Strand 4	F	152	155	parallel
Strand 5	F	191	195	parallel
Strand 6	F	212	216	parallel
Strand 7	F	256	258	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	198	200	first strand
Strand 2	F	220	222	parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	318	320	first strand
Strand 2	F	328	335	anti-parallel
Strand 3	F	338	345	anti-parallel
Strand 4	F	376	382	parallel
Strand 5	F	414	423	parallel
Strand 6	F	448	450	parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	318	320	first strand
Strand 2	F	328	335	anti-parallel
Strand 3	F	338	345	anti-parallel
Strand 4	F	376	382	parallel
Strand 5	F	414	423	parallel
Strand 6	F	440	443	parallel
Strand 7	F	503	504	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FIF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FIF