Analysis of interatomic Contacts of Structural Units in PDB entry:
5FIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FIP entry

There are 4 chains in PDB entry 5FIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 50ARG 380
B
 MET 50GLU 381
C
 MET 50ARG 380
D
 MET 50MET 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 5FIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
53 58Right-handed alpha
Helix 2
2
A
92 96Right-handed 310
Helix 3
3
A
97 107Right-handed alpha
Helix 4
4
A
127 129Right-handed 310
Helix 5
5
A
130 144Right-handed alpha
Helix 6
6
A
162 166Right-handed 310
Helix 7
7
A
167 179Right-handed alpha
Helix 8
8
A
203 224Right-handed alpha
Helix 9
9
A
234 239Right-handed alpha
Helix 10
10
A
240 247Right-handed 310
Helix 11
11
A
274 286Right-handed alpha
Helix 12
12
A
307 321Right-handed alpha
Helix 13
13
A
355 358Right-handed 310
Helix 14
14
A
360 372Right-handed alpha
Helix 15
15
B
53 58Right-handed alpha
Helix 16
16
B
92 96Right-handed 310
Helix 17
17
B
97 107Right-handed alpha
Helix 18
18
B
129 144Right-handed alpha
Helix 19
19
B
162 166Right-handed 310
Helix 20
20
B
167 179Right-handed alpha
Helix 21
21
B
203 224Right-handed alpha
Helix 22
22
B
234 239Right-handed alpha
Helix 23
23
B
240 247Right-handed 310
Helix 24
24
B
274 286Right-handed alpha
Helix 25
25
B
307 321Right-handed alpha
Helix 26
26
B
355 358Right-handed 310
Helix 27
27
B
360 372Right-handed alpha
Helix 28
28
C
53 58Right-handed alpha
Helix 29
29
C
92 96Right-handed 310
Helix 30
30
C
97 107Right-handed alpha
Helix 31
31
C
127 129Right-handed 310
Helix 32
32
C
130 144Right-handed alpha
Helix 33
33
C
162 166Right-handed 310
Helix 34
34
C
167 179Right-handed alpha
Helix 35
35
C
203 224Right-handed alpha
Helix 36
36
C
234 239Right-handed alpha
Helix 37
37
C
240 247Right-handed 310
Helix 38
38
C
274 286Right-handed alpha
Helix 39
39
C
307 321Right-handed alpha
Helix 40
40
C
355 358Right-handed 310
Helix 41
41
C
360 372Right-handed alpha
Helix 42
42
D
53 58Right-handed alpha
Helix 43
43
D
92 96Right-handed 310
Helix 44
44
D
97 107Right-handed alpha
Helix 45
45
D
129 144Right-handed alpha
Helix 46
46
D
167 179Right-handed alpha
Helix 47
47
D
203 224Right-handed alpha
Helix 48
48
D
234 239Right-handed alpha
Helix 49
49
D
240 247Right-handed 310
Helix 50
50
D
274 286Right-handed alpha
Helix 51
51
D
307 321Right-handed alpha
Helix 52
52
D
355 358Right-handed 310
Helix 53
53
D
360 372Right-handed alpha
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There are 12 sheets in PDB entry 5FIP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
68 72anti-parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
325 328parallel
Strand 3
A
290 296parallel
Strand 4
A
254 261parallel
Strand 5
A
230 232parallel
Strand 6
A
185 188parallel
Strand 7
A
147 153parallel
Strand 8
A
112 118parallel
Strand 9
A
82 85parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 269first strand
Strand 2
A
272 273anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 65first strand
Strand 2
B
68 72anti-parallel
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There are 9 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 85first strand
Strand 2
B
325 328parallel
Strand 3
B
290 296parallel
Strand 4
B
254 261parallel
Strand 5
B
230 232parallel
Strand 6
B
185 188parallel
Strand 7
B
147 153parallel
Strand 8
B
112 118parallel
Strand 9
B
82 85parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 269first strand
Strand 2
B
272 273anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 65first strand
Strand 2
C
68 72anti-parallel
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There are 9 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 85first strand
Strand 2
C
325 328parallel
Strand 3
C
290 296parallel
Strand 4
C
254 261parallel
Strand 5
C
230 232parallel
Strand 6
C
185 188parallel
Strand 7
C
147 153parallel
Strand 8
C
112 118parallel
Strand 9
C
82 85parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
268 269first strand
Strand 2
C
272 273anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
61 65first strand
Strand 2
D
68 72anti-parallel
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There are 9 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
82 85first strand
Strand 2
D
325 328parallel
Strand 3
D
290 296parallel
Strand 4
D
254 261parallel
Strand 5
D
230 232parallel
Strand 6
D
185 188parallel
Strand 7
D
147 153parallel
Strand 8
D
112 118parallel
Strand 9
D
82 85parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
268 269first strand
Strand 2
D
272 273anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il