Analysis of interatomic Contacts of Structural Units in PDB entry:
5FJ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FJ5 entry

There are 2 chains in PDB entry 5FJ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ALA 761
B
 GLY 1ALA 761
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 5FJ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 18Right-handed 310
Helix 2
2
A
18 22Right-handed 310
Helix 3
3
A
62 77Right-handed alpha
Helix 4
4
A
81 98Right-handed alpha
Helix 5
5
A
100 110Right-handed alpha
Helix 6
6
A
129 138Right-handed alpha
Helix 7
7
A
145 159Right-handed alpha
Helix 8
8
A
182 204Right-handed alpha
Helix 9
9
A
223 240Right-handed alpha
Helix 10
10
A
245 261Right-handed alpha
Helix 11
11
A
280 286Right-handed alpha
Helix 12
12
A
287 291Right-handed 310
Helix 13
13
A
292 301Right-handed alpha
Helix 14
14
A
318 321Right-handed 310
Helix 15
15
A
322 327Right-handed alpha
Helix 16
16
A
339 343Right-handed 310
Helix 17
17
A
390 407Right-handed alpha
Helix 18
18
A
409 421Right-handed alpha
Helix 19
19
A
429 433Right-handed 310
Helix 20
20
A
441 450Right-handed alpha
Helix 21
21
A
455 464Right-handed alpha
Helix 22
22
A
475 494Right-handed alpha
Helix 23
23
A
544 551Right-handed alpha
Helix 24
24
A
568 573Right-handed alpha
Helix 25
25
A
607 612Right-handed 310
Helix 26
26
A
628 653Right-handed alpha
Helix 27
27
A
656 682Right-handed alpha
Helix 28
28
A
687 706Right-handed alpha
Helix 29
29
A
716 735Right-handed alpha
Helix 30
30
A
740 752Right-handed alpha
Helix 31
31
B
13 16Right-handed 310
Helix 32
32
B
17 23Right-handed alpha
Helix 33
33
B
62 76Right-handed alpha
Helix 34
34
B
81 93Right-handed alpha
Helix 35
35
B
100 111Right-handed alpha
Helix 36
36
B
127 139Right-handed alpha
Helix 37
37
B
143 151Right-handed alpha
Helix 38
38
B
151 156Right-handed alpha
Helix 39
39
B
182 210Right-handed alpha
Helix 40
40
B
224 229Right-handed alpha
Helix 41
41
B
230 240Right-handed alpha
Helix 42
42
B
245 262Right-handed alpha
Helix 43
43
B
266 270Right-handed 310
Helix 44
44
B
280 285Right-handed alpha
Helix 45
45
B
288 301Right-handed alpha
Helix 46
46
B
317 321Right-handed 310
Helix 47
47
B
392 408Right-handed alpha
Helix 48
48
B
409 419Right-handed alpha
Helix 49
49
B
441 449Right-handed alpha
Helix 50
50
B
454 464Right-handed alpha
Helix 51
51
B
472 498Right-handed alpha
Helix 52
52
B
544 552Right-handed alpha
Helix 53
53
B
568 575Right-handed alpha
Helix 54
54
B
626 653Right-handed alpha
Helix 55
55
B
656 682Right-handed alpha
Helix 56
56
B
684 703Right-handed alpha
Helix 57
57
B
717 731Right-handed alpha
Helix 58
58
B
742 753Right-handed alpha
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There are 7 sheets in PDB entry 5FJ5. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, BC, BD, BE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
171 173anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 376first strand
Strand 2
A
386 389anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 37first strand
Strand 2
B
501 504anti-parallel
Strand 3
B
517 520anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 54first strand
Strand 2
B
172 174anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
372 373first strand
Strand 2
B
622 623anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
376 377first strand
Strand 2
B
385 386anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
596 597first strand
Strand 2
B
600 601anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il