Analysis of interatomic Contacts of Structural Units in PDB entry:
5FJ7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FJ7 entry

There are 3 chains in PDB entry 5FJ7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ALA 761
B
 GLY 1ALA 761
C
 PRO 1ARG 664
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 87 helices in PDB entry 5FJ7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 18Right-handed 310
Helix 2
2
A
18 22Right-handed 310
Helix 3
3
A
62 77Right-handed alpha
Helix 4
4
A
81 98Right-handed alpha
Helix 5
5
A
100 110Right-handed alpha
Helix 6
6
A
129 138Right-handed alpha
Helix 7
7
A
145 159Right-handed alpha
Helix 8
8
A
182 204Right-handed alpha
Helix 9
9
A
223 240Right-handed alpha
Helix 10
10
A
245 261Right-handed alpha
Helix 11
11
A
280 286Right-handed alpha
Helix 12
12
A
287 291Right-handed 310
Helix 13
13
A
292 301Right-handed alpha
Helix 14
14
A
318 321Right-handed 310
Helix 15
15
A
322 327Right-handed alpha
Helix 16
16
A
339 343Right-handed 310
Helix 17
17
A
390 407Right-handed alpha
Helix 18
18
A
409 421Right-handed alpha
Helix 19
19
A
429 433Right-handed 310
Helix 20
20
A
441 450Right-handed alpha
Helix 21
21
A
455 464Right-handed alpha
Helix 22
22
A
475 494Right-handed alpha
Helix 23
23
A
544 551Right-handed alpha
Helix 24
24
A
568 573Right-handed alpha
Helix 25
25
A
607 612Right-handed 310
Helix 26
26
A
628 653Right-handed alpha
Helix 27
27
A
656 682Right-handed alpha
Helix 28
28
A
687 706Right-handed alpha
Helix 29
29
A
716 735Right-handed alpha
Helix 30
30
A
740 752Right-handed alpha
Helix 31
31
B
13 18Right-handed 310
Helix 32
32
B
18 22Right-handed 310
Helix 33
33
B
62 77Right-handed alpha
Helix 34
34
B
81 98Right-handed alpha
Helix 35
35
B
100 110Right-handed alpha
Helix 36
36
B
129 138Right-handed alpha
Helix 37
37
B
145 159Right-handed alpha
Helix 38
38
B
182 204Right-handed alpha
Helix 39
39
B
223 240Right-handed alpha
Helix 40
40
B
245 261Right-handed alpha
Helix 41
41
B
280 286Right-handed alpha
Helix 42
42
B
287 291Right-handed 310
Helix 43
43
B
292 301Right-handed alpha
Helix 44
44
B
318 321Right-handed 310
Helix 45
45
B
322 327Right-handed alpha
Helix 46
46
B
339 343Right-handed 310
Helix 47
47
B
390 407Right-handed alpha
Helix 48
48
B
409 421Right-handed alpha
Helix 49
49
B
429 433Right-handed 310
Helix 50
50
B
441 450Right-handed alpha
Helix 51
51
B
455 464Right-handed alpha
Helix 52
52
B
475 494Right-handed alpha
Helix 53
53
B
544 551Right-handed alpha
Helix 54
54
B
568 573Right-handed alpha
Helix 55
55
B
607 612Right-handed 310
Helix 56
56
B
628 653Right-handed alpha
Helix 57
57
B
656 682Right-handed alpha
Helix 58
58
B
687 706Right-handed alpha
Helix 59
59
B
716 735Right-handed alpha
Helix 60
60
B
740 752Right-handed alpha
Helix 61
61
C
11 18Right-handed alpha
Helix 62
62
C
21 29Right-handed alpha
Helix 63
63
C
47 65Right-handed alpha
Helix 64
64
C
83 87Right-handed 310
Helix 65
65
C
107 111Right-handed 310
Helix 66
66
C
120 135Right-handed alpha
Helix 67
67
C
159 183Right-handed alpha
Helix 68
68
C
185 190Right-handed alpha
Helix 69
69
C
229 235Right-handed alpha
Helix 70
70
C
249 255Right-handed alpha
Helix 71
71
C
279 298Right-handed alpha
Helix 72
72
C
307 316Right-handed alpha
Helix 73
73
C
333 347Right-handed alpha
Helix 74
74
C
350 361Right-handed alpha
Helix 75
75
C
397 418Right-handed alpha
Helix 76
76
C
420 426Right-handed 310
Helix 77
77
C
428 441Right-handed alpha
Helix 78
78
C
464 478Right-handed alpha
Helix 79
79
C
518 527Right-handed alpha
Helix 80
80
C
546 559Right-handed alpha
Helix 81
81
C
563 577Right-handed alpha
Helix 82
82
C
582 602Right-handed alpha
Helix 83
83
C
615 624Right-handed alpha
Helix 84
84
C
625 630Right-handed 310
Helix 85
85
C
633 637Right-handed 310
Helix 86
86
C
638 645Right-handed alpha
Helix 87
87
C
650 662Right-handed alpha
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There are 10 sheets in PDB entry 5FJ7. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, CC, CD, CE, CF,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
171 173anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 376first strand
Strand 2
A
386 389anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
171 173anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 376first strand
Strand 2
B
386 389anti-parallel
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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
89 94first strand
Strand 2
C
265 270parallel
Strand 3
C
204 206anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
144 146first strand
Strand 2
C
646 648anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
200 201first strand
Strand 2
C
273 274anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
226 228first strand
Strand 2
C
242 244anti-parallel
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There are 3 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
319 320first strand
Strand 2
C
454 459anti-parallel
Strand 3
C
447 451anti-parallel
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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
366 367first strand
Strand 2
C
377 378anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il