Analysis of interatomic Contacts of Structural Units in PDB entry:
5FJJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FJJ entry

There are 4 chains in PDB entry 5FJJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 23	GLN 861
B	LEU 23	ALA 860
C	LEU 23	GLN 861
D	LEU 23	ALA 860

There are128 helices in PDB entry 5FJJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	38	40	Right-handed 310
Helix 2	2	A	41	53	Right-handed alpha
Helix 3	3	A	56	65	Right-handed alpha
Helix 4	4	A	82	85	Right-handed 310
Helix 5	5	A	109	117	Right-handed alpha
Helix 6	6	A	118	136	Right-handed alpha
Helix 7	7	A	157	161	Right-handed 310
Helix 8	8	A	165	183	Right-handed alpha
Helix 9	9	A	202	209	Right-handed alpha
Helix 10	10	A	222	229	Right-handed alpha
Helix 11	11	A	231	240	Right-handed alpha
Helix 12	12	A	257	259	Right-handed 310
Helix 13	13	A	260	265	Right-handed alpha
Helix 14	14	A	266	272	Right-handed alpha
Helix 15	15	A	287	295	Right-handed alpha
Helix 16	16	A	314	323	Right-handed alpha
Helix 17	17	A	327	345	Right-handed alpha
Helix 18	18	A	346	351	Right-handed alpha
Helix 19	19	A	388	400	Right-handed alpha
Helix 20	20	A	424	427	Right-handed 310
Helix 21	21	A	436	440	Right-handed 310
Helix 22	22	A	462	473	Right-handed alpha
Helix 23	23	A	486	497	Right-handed alpha
Helix 24	24	A	530	542	Right-handed alpha
Helix 25	25	A	578	588	Right-handed alpha
Helix 26	26	A	605	609	Right-handed 310
Helix 27	27	A	634	641	Right-handed alpha
Helix 28	28	A	691	695	Right-handed 310
Helix 29	29	A	716	722	Right-handed alpha
Helix 30	30	A	729	733	Right-handed 310
Helix 31	31	A	756	760	Right-handed 310
Helix 32	32	A	820	824	Right-handed alpha
Helix 33	33	B	38	40	Right-handed 310
Helix 34	34	B	41	53	Right-handed alpha
Helix 35	35	B	56	65	Right-handed alpha
Helix 36	36	B	82	85	Right-handed 310
Helix 37	37	B	109	117	Right-handed alpha
Helix 38	38	B	118	136	Right-handed alpha
Helix 39	39	B	157	161	Right-handed 310
Helix 40	40	B	165	183	Right-handed alpha
Helix 41	41	B	202	209	Right-handed alpha
Helix 42	42	B	222	229	Right-handed alpha
Helix 43	43	B	231	240	Right-handed alpha
Helix 44	44	B	257	259	Right-handed 310
Helix 45	45	B	260	265	Right-handed alpha
Helix 46	46	B	266	272	Right-handed alpha
Helix 47	47	B	287	295	Right-handed alpha
Helix 48	48	B	314	323	Right-handed alpha
Helix 49	49	B	327	345	Right-handed alpha
Helix 50	50	B	346	351	Right-handed alpha
Helix 51	51	B	388	400	Right-handed alpha
Helix 52	52	B	424	427	Right-handed 310
Helix 53	53	B	436	440	Right-handed 310
Helix 54	54	B	462	473	Right-handed alpha
Helix 55	55	B	486	497	Right-handed alpha
Helix 56	56	B	530	542	Right-handed alpha
Helix 57	57	B	578	588	Right-handed alpha
Helix 58	58	B	605	609	Right-handed 310
Helix 59	59	B	634	641	Right-handed alpha
Helix 60	60	B	691	695	Right-handed 310
Helix 61	61	B	716	722	Right-handed alpha
Helix 62	62	B	729	733	Right-handed 310
Helix 63	63	B	756	760	Right-handed 310
Helix 64	64	B	820	824	Right-handed alpha
Helix 65	65	C	38	40	Right-handed 310
Helix 66	66	C	41	53	Right-handed alpha
Helix 67	67	C	56	65	Right-handed alpha
Helix 68	68	C	82	85	Right-handed 310
Helix 69	69	C	109	117	Right-handed alpha
Helix 70	70	C	118	136	Right-handed alpha
Helix 71	71	C	157	161	Right-handed 310
Helix 72	72	C	165	183	Right-handed alpha
Helix 73	73	C	202	209	Right-handed alpha
Helix 74	74	C	222	229	Right-handed alpha
Helix 75	75	C	231	240	Right-handed alpha
Helix 76	76	C	257	259	Right-handed 310
Helix 77	77	C	260	265	Right-handed alpha
Helix 78	78	C	266	272	Right-handed alpha
Helix 79	79	C	287	295	Right-handed alpha
Helix 80	80	C	314	323	Right-handed alpha
Helix 81	81	C	327	345	Right-handed alpha
Helix 82	82	C	346	351	Right-handed alpha
Helix 83	83	C	388	400	Right-handed alpha
Helix 84	84	C	424	427	Right-handed 310
Helix 85	85	C	436	440	Right-handed 310
Helix 86	86	C	462	473	Right-handed alpha
Helix 87	87	C	486	497	Right-handed alpha
Helix 88	88	C	530	542	Right-handed alpha
Helix 89	89	C	578	588	Right-handed alpha
Helix 90	90	C	605	609	Right-handed 310
Helix 91	91	C	634	641	Right-handed alpha
Helix 92	92	C	691	695	Right-handed 310
Helix 93	93	C	716	722	Right-handed alpha
Helix 94	94	C	729	733	Right-handed 310
Helix 95	95	C	756	760	Right-handed 310
Helix 96	96	C	820	824	Right-handed alpha
Helix 97	97	D	38	40	Right-handed 310
Helix 98	98	D	41	54	Right-handed alpha
Helix 99	99	D	56	65	Right-handed alpha
Helix 100	100	D	82	85	Right-handed 310
Helix 101	101	D	109	117	Right-handed alpha
Helix 102	102	D	118	136	Right-handed alpha
Helix 103	103	D	157	161	Right-handed 310
Helix 104	104	D	165	183	Right-handed alpha
Helix 105	105	D	202	209	Right-handed alpha
Helix 106	106	D	222	229	Right-handed alpha
Helix 107	107	D	231	240	Right-handed alpha
Helix 108	108	D	257	259	Right-handed 310
Helix 109	109	D	260	265	Right-handed alpha
Helix 110	110	D	266	272	Right-handed alpha
Helix 111	111	D	287	295	Right-handed alpha
Helix 112	112	D	314	323	Right-handed alpha
Helix 113	113	D	327	345	Right-handed alpha
Helix 114	114	D	346	351	Right-handed alpha
Helix 115	115	D	388	400	Right-handed alpha
Helix 116	116	D	424	427	Right-handed 310
Helix 117	117	D	436	440	Right-handed 310
Helix 118	118	D	462	472	Right-handed alpha
Helix 119	119	D	486	497	Right-handed alpha
Helix 120	120	D	530	542	Right-handed alpha
Helix 121	121	D	578	588	Right-handed alpha
Helix 122	122	D	605	609	Right-handed 310
Helix 123	123	D	634	641	Right-handed alpha
Helix 124	124	D	691	695	Right-handed 310
Helix 125	125	D	716	722	Right-handed alpha
Helix 126	126	D	729	733	Right-handed 310
Helix 127	127	D	756	760	Right-handed 310
Helix 128	128	D	820	824	Right-handed alpha

There are 36 sheets in PDB entry 5FJJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, BA, BB, BC, BD, BE, BF, BG, BH, BI, CA, CB, CC, CD, CE, CF, CG, CH, CI, A, DB, C, DD, DE, DF, G, DH, DI,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	77	first strand
Strand 2	A	90	92	anti-parallel
Strand 3	A	140	141	parallel
Strand 4	A	186	192	parallel
Strand 5	A	244	247	parallel
Strand 6	A	277	280	parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	252	first strand
Strand 2	A	218	220	parallel
Strand 3	A	624	626	parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	368	first strand
Strand 2	A	373	378	anti-parallel

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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	406	first strand
Strand 2	A	566	571	anti-parallel
Strand 3	A	545	551	parallel
Strand 4	A	499	506	parallel
Strand 5	A	418	422	parallel
Strand 6	A	477	481	parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	515	first strand
Strand 2	A	518	519	anti-parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	658	667	first strand
Strand 2	A	762	772	anti-parallel
Strand 3	A	811	819	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	778	780	first strand
Strand 2	A	804	806	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	797	801	first strand
Strand 2	A	783	787	anti-parallel
Strand 3	A	841	845	anti-parallel
Strand 4	A	853	856	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	825	827	first strand
Strand 2	A	832	834	anti-parallel

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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	B	90	92	anti-parallel
Strand 3	B	140	141	parallel
Strand 4	B	186	192	parallel
Strand 5	B	244	247	parallel
Strand 6	B	277	280	parallel

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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	252	first strand
Strand 2	B	218	220	parallel
Strand 3	B	624	626	parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	368	first strand
Strand 2	B	373	378	anti-parallel

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There are 6 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	406	first strand
Strand 2	B	566	571	anti-parallel
Strand 3	B	545	551	parallel
Strand 4	B	499	506	parallel
Strand 5	B	418	422	parallel
Strand 6	B	477	481	parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	514	515	first strand
Strand 2	B	518	519	anti-parallel

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There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	658	667	first strand
Strand 2	B	762	772	anti-parallel
Strand 3	B	811	819	anti-parallel

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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	778	780	first strand
Strand 2	B	804	806	anti-parallel

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There are 4 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	797	801	first strand
Strand 2	B	783	787	anti-parallel
Strand 3	B	841	845	anti-parallel
Strand 4	B	853	856	anti-parallel

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There are 2 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	825	827	first strand
Strand 2	B	832	834	anti-parallel

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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	77	first strand
Strand 2	C	90	92	anti-parallel
Strand 3	C	140	141	parallel
Strand 4	C	186	192	parallel
Strand 5	C	244	247	parallel
Strand 6	C	277	280	parallel

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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	252	first strand
Strand 2	C	218	220	parallel
Strand 3	C	624	626	parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	364	368	first strand
Strand 2	C	373	378	anti-parallel

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There are 6 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	402	406	first strand
Strand 2	C	566	571	anti-parallel
Strand 3	C	545	551	parallel
Strand 4	C	499	506	parallel
Strand 5	C	418	422	parallel
Strand 6	C	477	481	parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	514	515	first strand
Strand 2	C	518	519	anti-parallel

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There are 3 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	658	667	first strand
Strand 2	C	762	772	anti-parallel
Strand 3	C	811	819	anti-parallel

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There are 2 strands in CG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	778	780	first strand
Strand 2	C	804	806	anti-parallel

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There are 4 strands in CH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	797	801	first strand
Strand 2	C	783	787	anti-parallel
Strand 3	C	841	845	anti-parallel
Strand 4	C	853	856	anti-parallel

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There are 2 strands in CI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	825	827	first strand
Strand 2	C	832	834	anti-parallel

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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	77	first strand
Strand 2	D	90	92	anti-parallel
Strand 3	D	140	141	parallel
Strand 4	D	186	192	parallel
Strand 5	D	244	247	parallel
Strand 6	D	277	280	parallel

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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	252	first strand
Strand 2	D	218	220	parallel
Strand 3	D	624	626	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	364	368	first strand
Strand 2	D	373	378	anti-parallel

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There are 6 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	402	406	first strand
Strand 2	D	566	571	anti-parallel
Strand 3	D	545	551	parallel
Strand 4	D	499	506	parallel
Strand 5	D	418	422	parallel
Strand 6	D	477	481	parallel

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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	514	515	first strand
Strand 2	D	518	519	anti-parallel

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There are 3 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	658	667	first strand
Strand 2	D	762	772	anti-parallel
Strand 3	D	811	819	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	778	780	first strand
Strand 2	D	804	806	anti-parallel

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There are 4 strands in DH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	797	801	first strand
Strand 2	D	783	787	anti-parallel
Strand 3	D	841	845	anti-parallel
Strand 4	D	853	856	anti-parallel

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There are 2 strands in DI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	825	827	first strand
Strand 2	D	832	834	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FJJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FJJ