Analysis of interatomic Contacts of Structural Units in PDB entry:
5FJK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FJK entry

There is 1 chain in PDB entry 5FJK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 10LYS 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5FJK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 27Right-handed alpha
Helix 2
2
A
28 39Right-handed alpha
Helix 3
3
A
40 44Right-handed 310
Helix 4
4
A
61 66Right-handed 310
Helix 5
5
A
96 104Right-handed alpha
Helix 6
6
A
115 127Right-handed alpha
Helix 7
7
A
157 167Right-handed alpha
Helix 8
8
A
192 196Right-handed 310
Helix 9
9
A
214 216Right-handed 310
Helix 10
10
A
217 229Right-handed alpha
Helix 11
11
A
229 236Right-handed alpha
Helix 12
12
A
238 243Right-handed 310
Helix 13
13
A
248 256Right-handed alpha
Helix 14
14
A
295 297Right-handed 310
Helix 15
15
A
298 305Right-handed alpha
Helix 16
16
A
319 327Right-handed alpha
Helix 17
17
A
330 336Right-handed alpha
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There are 3 sheets in PDB entry 5FJK. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
A
46 49parallel
Strand 3
A
269 272anti-parallel
Strand 4
A
197 205anti-parallel
Strand 5
A
286 293anti-parallel
Strand 6
A
177 181anti-parallel
Strand 7
A
133 139anti-parallel
Strand 8
A
73 80anti-parallel
Strand 9
A
83 90anti-parallel
Strand 10
A
245 247anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 69first strand
Strand 2
A
94 95anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 190first strand
Strand 2
A
277 282anti-parallel
Strand 3
A
208 213anti-parallel
Strand 4
A
260 264anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il