Analysis of interatomic Contacts of Structural Units in PDB entry:
5FJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FJM entry

There are 2 chains in PDB entry 5FJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 28LYS 474
B
 MET 28LYS 474
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5FJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
64 76Right-handed alpha
Helix 2
2
A
92 96Right-handed 310
Helix 3
3
A
110 123Right-handed alpha
Helix 4
4
A
123 129Right-handed alpha
Helix 5
5
A
145 163Right-handed alpha
Helix 6
6
A
176 183Right-handed alpha
Helix 7
7
A
203 218Right-handed alpha
Helix 8
8
A
257 259Right-handed 310
Helix 9
9
A
260 267Right-handed alpha
Helix 10
10
A
323 330Right-handed alpha
Helix 11
11
A
331 334Right-handed 310
Helix 12
12
A
349 358Right-handed alpha
Helix 13
13
A
368 372Right-handed 310
Helix 14
14
A
381 396Right-handed alpha
Helix 15
15
A
397 402Right-handed 310
Helix 16
16
A
439 457Right-handed alpha
Helix 17
17
A
464 468Right-handed 310
Helix 18
18
A
468 473Right-handed 310
Helix 19
19
B
64 77Right-handed alpha
Helix 20
20
B
92 97Right-handed alpha
Helix 21
21
B
110 123Right-handed alpha
Helix 22
22
B
123 129Right-handed alpha
Helix 23
23
B
145 163Right-handed alpha
Helix 24
24
B
176 183Right-handed alpha
Helix 25
25
B
203 218Right-handed alpha
Helix 26
26
B
257 259Right-handed 310
Helix 27
27
B
260 267Right-handed alpha
Helix 28
28
B
323 329Right-handed alpha
Helix 29
29
B
330 337Right-handed 310
Helix 30
30
B
349 358Right-handed alpha
Helix 31
31
B
368 372Right-handed 310
Helix 32
32
B
381 396Right-handed alpha
Helix 33
33
B
397 402Right-handed 310
Helix 34
34
B
439 457Right-handed alpha
Helix 35
35
B
464 468Right-handed 310
Helix 36
36
B
468 473Right-handed 310
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There are 12 sheets in PDB entry 5FJM. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
376 378anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 223first strand
Strand 2
A
81 84parallel
Strand 3
A
58 61parallel
Strand 4
A
253 255parallel
Strand 5
A
431 435parallel
Strand 6
A
421 424anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
200 201anti-parallel
Strand 3
A
135 136anti-parallel
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There are 8 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 175first strand
Strand 2
A
192 196anti-parallel
Strand 3
A
139 142anti-parallel
Strand 4
A
294 297parallel
Strand 5
A
301 305anti-parallel
Strand 6
A
311 313anti-parallel
Strand 7
A
277 284anti-parallel
Strand 8
A
404 412anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 234first strand
Strand 2
A
237 243anti-parallel
Strand 3
A
246 249anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 321first strand
Strand 2
A
344 347parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 37first strand
Strand 2
B
376 378anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 223first strand
Strand 2
B
81 84parallel
Strand 3
B
58 61parallel
Strand 4
B
253 255parallel
Strand 5
B
431 435parallel
Strand 6
B
421 424anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 101first strand
Strand 2
B
200 201anti-parallel
Strand 3
B
135 136anti-parallel
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There are 8 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 175first strand
Strand 2
B
192 196anti-parallel
Strand 3
B
139 142anti-parallel
Strand 4
B
294 297parallel
Strand 5
B
301 305anti-parallel
Strand 6
B
311 314anti-parallel
Strand 7
B
277 284anti-parallel
Strand 8
B
404 412anti-parallel
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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 234first strand
Strand 2
B
237 243anti-parallel
Strand 3
B
246 249anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 321first strand
Strand 2
B
344 347parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il