Analysis of interatomic Contacts of Structural Units in PDB entry:
5FJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FJO entry

There are 2 chains in PDB entry 5FJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 367
B
 MET 1SER 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5FJO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
59 70Right-handed alpha
Helix 2
2
A
70 78Right-handed alpha
Helix 3
3
A
82 91Right-handed alpha
Helix 4
4
A
96 115Right-handed alpha
Helix 5
5
A
118 124Right-handed alpha
Helix 6
6
A
141 156Right-handed alpha
Helix 7
7
A
169 181Right-handed alpha
Helix 8
8
A
195 197Right-handed 310
Helix 9
9
A
198 204Right-handed alpha
Helix 10
10
A
205 209Right-handed 310
Helix 11
11
A
221 230Right-handed alpha
Helix 12
12
A
244 254Right-handed alpha
Helix 13
13
A
264 268Right-handed 310
Helix 14
14
A
269 283Right-handed alpha
Helix 15
15
A
295 306Right-handed alpha
Helix 16
16
A
319 323Right-handed 310
Helix 17
17
A
352 359Right-handed alpha
Helix 18
18
B
59 70Right-handed alpha
Helix 19
19
B
70 78Right-handed alpha
Helix 20
20
B
82 91Right-handed alpha
Helix 21
21
B
96 115Right-handed alpha
Helix 22
22
B
118 124Right-handed alpha
Helix 23
23
B
141 156Right-handed alpha
Helix 24
24
B
169 181Right-handed alpha
Helix 25
25
B
195 197Right-handed 310
Helix 26
26
B
198 204Right-handed alpha
Helix 27
27
B
205 209Right-handed 310
Helix 28
28
B
221 230Right-handed alpha
Helix 29
29
B
244 254Right-handed alpha
Helix 30
30
B
264 268Right-handed 310
Helix 31
31
B
269 283Right-handed alpha
Helix 32
32
B
295 306Right-handed alpha
Helix 33
33
B
319 323Right-handed 310
Helix 34
34
B
352 359Right-handed alpha
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There are 6 sheets in PDB entry 5FJO. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
24 37anti-parallel
Strand 3
A
5 21anti-parallel
Strand 4
A
360 366anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
338 340anti-parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
160 163parallel
Strand 3
A
186 189parallel
Strand 4
A
213 214parallel
Strand 5
A
236 238parallel
Strand 6
A
259 262parallel
Strand 7
A
287 289parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 46first strand
Strand 2
B
24 38anti-parallel
Strand 3
B
5 21anti-parallel
Strand 4
B
360 367anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 131first strand
Strand 2
B
338 340anti-parallel
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There are 7 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 136first strand
Strand 2
B
160 163parallel
Strand 3
B
186 189parallel
Strand 4
B
213 214parallel
Strand 5
B
236 238parallel
Strand 6
B
259 262parallel
Strand 7
B
287 289parallel
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