Analysis of interatomic Contacts of Structural Units in PDB entry:
5FJW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FJW entry

There are 16 chains in PDB entry 5FJW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 284	GLN 546
B	ASP 284	GLN 546
C	ASP 284	GLN 546
D	ASP 284	GLN 546
E	ASP 284	GLN 546
F	ASP 284	GLN 546
G	ASP 284	GLN 546
H	ASP 284	GLN 546
L	ASP 411	ASP 419
M	ASP 411	ASP 419
N	ASP 411	ASP 419
O	ASP 411	ASP 419
P	ASP 411	ASP 419
Q	ASP 411	ASP 419
R	ASP 411	ASP 419
S	ASP 411	ASP 419

There are 30 helices in PDB entry 5FJW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	324	328	Right-handed 310
Helix 2	2	A	342	346	Right-handed 310
Helix 3	3	A	354	362	Right-handed alpha
Helix 4	4	A	489	494	Right-handed 310
Helix 5	5	B	324	328	Right-handed 310
Helix 6	6	B	354	362	Right-handed alpha
Helix 7	7	B	489	494	Right-handed 310
Helix 8	8	C	324	328	Right-handed 310
Helix 9	9	C	354	362	Right-handed alpha
Helix 10	10	C	489	494	Right-handed 310
Helix 11	11	D	324	328	Right-handed 310
Helix 12	12	D	342	346	Right-handed 310
Helix 13	13	D	354	362	Right-handed alpha
Helix 14	14	D	489	494	Right-handed 310
Helix 15	15	E	324	328	Right-handed 310
Helix 16	16	E	342	346	Right-handed 310
Helix 17	17	E	354	361	Right-handed alpha
Helix 18	18	E	490	494	Right-handed 310
Helix 19	19	F	324	328	Right-handed 310
Helix 20	20	F	342	346	Right-handed 310
Helix 21	21	F	354	361	Right-handed alpha
Helix 22	22	F	489	494	Right-handed 310
Helix 23	23	G	324	328	Right-handed 310
Helix 24	24	G	342	346	Right-handed 310
Helix 25	25	G	354	362	Right-handed alpha
Helix 26	26	G	489	493	Right-handed 310
Helix 27	27	H	324	328	Right-handed 310
Helix 28	28	H	342	346	Right-handed 310
Helix 29	29	H	354	360	Right-handed alpha
Helix 30	30	H	489	493	Right-handed 310

There are 43 sheets in PDB entry 5FJW. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, CA, AE, AF, BA, BB, BC, BD, A, BE, BF, CB, CC, DB, C, EA, EB, EC, ED, EE, EF, FA, FB, FC, FD, FE, GA, GB, GC, GD, GE, GF, GG, HA, HB, HC, HD, HE, HF, HG,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	380	389	anti-parallel
Strand 3	A	309	322	anti-parallel
Strand 4	A	291	303	anti-parallel
Strand 5	A	533	545	parallel
Strand 6	A	501	502	anti-parallel

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There are 15 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	380	389	anti-parallel
Strand 3	A	309	322	anti-parallel
Strand 4	A	291	303	anti-parallel
Strand 5	A	533	545	parallel
Strand 6	A	496	499	anti-parallel
Strand 7	A	428	435	anti-parallel
Strand 8	A	465	473	anti-parallel
Strand 9	A	456	461	anti-parallel
Strand 10	C	456	461	anti-parallel
Strand 11	C	465	473	anti-parallel
Strand 12	C	428	435	anti-parallel
Strand 13	C	496	499	anti-parallel
Strand 14	C	533	545	anti-parallel
Strand 15	C	501	504	anti-parallel

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There are 18 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	380	389	anti-parallel
Strand 3	A	309	322	anti-parallel
Strand 4	A	291	303	anti-parallel
Strand 5	A	533	545	parallel
Strand 6	A	496	499	anti-parallel
Strand 7	A	428	435	anti-parallel
Strand 8	A	465	473	anti-parallel
Strand 9	A	456	461	anti-parallel
Strand 10	C	456	461	anti-parallel
Strand 11	C	465	473	anti-parallel
Strand 12	C	428	435	anti-parallel
Strand 13	C	496	499	anti-parallel
Strand 14	C	533	545	anti-parallel
Strand 15	C	291	303	parallel
Strand 16	C	309	322	parallel
Strand 17	C	380	389	parallel
Strand 18	C	348	349	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	501	502	first strand
Strand 2	A	533	545	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	501	504	first strand
Strand 2	C	533	545	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	A	330	334	anti-parallel
Strand 3	A	517	522	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	407	first strand
Strand 2	A	413	422	anti-parallel
Strand 3	A	478	486	anti-parallel
Strand 4	A	444	445	anti-parallel

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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	349	first strand
Strand 2	B	380	389	anti-parallel
Strand 3	B	309	322	parallel
Strand 4	B	291	303	anti-parallel
Strand 5	B	533	545	anti-parallel
Strand 6	B	501	504	anti-parallel

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There are 15 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	349	first strand
Strand 2	B	380	389	anti-parallel
Strand 3	B	309	322	parallel
Strand 4	B	291	303	anti-parallel
Strand 5	B	533	545	anti-parallel
Strand 6	B	496	499	anti-parallel
Strand 7	B	428	435	anti-parallel
Strand 8	B	465	473	anti-parallel
Strand 9	B	456	461	anti-parallel
Strand 10	D	455	461	anti-parallel
Strand 11	D	465	473	anti-parallel
Strand 12	D	428	435	anti-parallel
Strand 13	D	496	499	anti-parallel
Strand 14	D	533	545	anti-parallel
Strand 15	D	501	504	parallel

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There are 18 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	349	first strand
Strand 2	B	380	389	anti-parallel
Strand 3	B	309	322	parallel
Strand 4	B	291	303	anti-parallel
Strand 5	B	533	545	anti-parallel
Strand 6	B	496	499	anti-parallel
Strand 7	B	428	435	anti-parallel
Strand 8	B	465	473	anti-parallel
Strand 9	B	456	461	anti-parallel
Strand 10	D	455	461	anti-parallel
Strand 11	D	465	473	anti-parallel
Strand 12	D	428	435	anti-parallel
Strand 13	D	496	499	anti-parallel
Strand 14	D	533	545	anti-parallel
Strand 15	D	291	303	parallel
Strand 16	D	309	322	anti-parallel
Strand 17	D	380	389	anti-parallel
Strand 18	D	348	349	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	501	504	first strand
Strand 2	B	533	545	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	501	504	first strand
Strand 2	D	533	545	parallel

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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	364	first strand
Strand 2	B	330	334	anti-parallel
Strand 3	B	517	522	anti-parallel

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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	407	first strand
Strand 2	B	413	422	anti-parallel
Strand 3	B	478	486	anti-parallel
Strand 4	B	444	445	anti-parallel

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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	364	first strand
Strand 2	C	330	334	anti-parallel
Strand 3	C	517	522	anti-parallel

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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	407	first strand
Strand 2	C	413	422	anti-parallel
Strand 3	C	478	486	anti-parallel
Strand 4	C	444	445	anti-parallel

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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	363	364	first strand
Strand 2	D	330	334	anti-parallel
Strand 3	D	517	522	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	399	407	first strand
Strand 2	D	413	422	anti-parallel
Strand 3	D	478	486	anti-parallel
Strand 4	D	444	446	anti-parallel

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There are 6 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	348	349	first strand
Strand 2	E	380	389	anti-parallel
Strand 3	E	309	322	anti-parallel
Strand 4	E	291	303	anti-parallel
Strand 5	E	533	545	parallel
Strand 6	E	501	504	anti-parallel

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There are 6 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	348	349	first strand
Strand 2	E	380	389	anti-parallel
Strand 3	E	309	322	anti-parallel
Strand 4	E	291	303	anti-parallel
Strand 5	E	533	545	parallel
Strand 6	E	496	497	anti-parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	501	504	first strand
Strand 2	E	533	545	anti-parallel

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There are 4 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	363	364	first strand
Strand 2	E	330	334	anti-parallel
Strand 3	E	517	522	anti-parallel
Strand 4	E	525	529	anti-parallel

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There are 4 strands in EE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	399	407	first strand
Strand 2	E	413	422	anti-parallel
Strand 3	E	481	486	anti-parallel
Strand 4	E	444	445	anti-parallel

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There are 3 strands in EF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	428	435	first strand
Strand 2	E	466	473	anti-parallel
Strand 3	E	456	460	anti-parallel

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There are 6 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	348	349	first strand
Strand 2	F	380	389	anti-parallel
Strand 3	F	309	322	anti-parallel
Strand 4	F	291	303	anti-parallel
Strand 5	F	533	545	parallel
Strand 6	F	503	504	anti-parallel

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There are 9 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	348	349	first strand
Strand 2	F	380	389	anti-parallel
Strand 3	F	309	322	anti-parallel
Strand 4	F	291	303	anti-parallel
Strand 5	F	533	545	parallel
Strand 6	F	496	499	anti-parallel
Strand 7	F	428	435	anti-parallel
Strand 8	F	466	473	anti-parallel
Strand 9	F	456	460	anti-parallel

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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	503	504	first strand
Strand 2	F	533	545	anti-parallel

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There are 3 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	363	364	first strand
Strand 2	F	330	334	anti-parallel
Strand 3	F	517	522	anti-parallel

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There are 4 strands in FE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	399	407	first strand
Strand 2	F	413	422	anti-parallel
Strand 3	F	478	486	anti-parallel
Strand 4	F	444	445	anti-parallel

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There are 6 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	348	349	first strand
Strand 2	G	380	389	anti-parallel
Strand 3	G	309	322	anti-parallel
Strand 4	G	291	303	anti-parallel
Strand 5	G	533	545	parallel
Strand 6	G	501	504	anti-parallel

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There are 9 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	348	349	first strand
Strand 2	G	380	389	anti-parallel
Strand 3	G	309	322	anti-parallel
Strand 4	G	291	303	anti-parallel
Strand 5	G	533	545	parallel
Strand 6	G	496	499	anti-parallel
Strand 7	G	432	435	anti-parallel
Strand 8	G	466	469	anti-parallel
Strand 9	G	456	460	anti-parallel

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There are 2 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	501	504	first strand
Strand 2	G	533	545	anti-parallel

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There are 3 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	363	364	first strand
Strand 2	G	330	334	anti-parallel
Strand 3	G	517	522	anti-parallel

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There are 2 strands in GE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	399	400	first strand
Strand 2	G	421	422	anti-parallel

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There are 4 strands in GF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	403	407	first strand
Strand 2	G	414	418	anti-parallel
Strand 3	G	481	485	anti-parallel
Strand 4	G	444	445	anti-parallel

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There are 2 strands in GG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	428	429	first strand
Strand 2	G	472	473	anti-parallel

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There are 6 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	348	349	first strand
Strand 2	H	380	389	anti-parallel
Strand 3	H	309	322	anti-parallel
Strand 4	H	291	303	anti-parallel
Strand 5	H	533	545	parallel
Strand 6	H	503	504	anti-parallel

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There are 9 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	348	349	first strand
Strand 2	H	380	389	anti-parallel
Strand 3	H	309	322	anti-parallel
Strand 4	H	291	303	anti-parallel
Strand 5	H	533	545	parallel
Strand 6	H	496	499	anti-parallel
Strand 7	H	432	435	anti-parallel
Strand 8	H	466	469	anti-parallel
Strand 9	H	456	457	anti-parallel

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There are 2 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	503	504	first strand
Strand 2	H	533	545	anti-parallel

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There are 3 strands in HD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	363	364	first strand
Strand 2	H	330	334	anti-parallel
Strand 3	H	517	522	anti-parallel

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There are 2 strands in HE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	399	400	first strand
Strand 2	H	421	422	anti-parallel

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There are 3 strands in HF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	403	407	first strand
Strand 2	H	413	418	anti-parallel
Strand 3	H	481	486	anti-parallel

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There are 2 strands in HG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	428	429	first strand
Strand 2	H	472	473	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FJW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FJW