Analysis of interatomic Contacts of Structural Units in PDB entry:
5FJZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FJZ entry

There are 8 chains in PDB entry 5FJZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 285	GLN 546
B	VAL 285	GLN 546
C	VAL 285	GLN 546
D	VAL 285	GLN 546
P	ASP 2	VAL 7
Q	ASP 2	VAL 7
R	ASP 2	VAL 7
S	ASP 2	VAL 7

There are 18 helices in PDB entry 5FJZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	324	328	Right-handed 310
Helix 2	2	A	342	346	Right-handed 310
Helix 3	3	A	354	362	Right-handed alpha
Helix 4	4	A	447	450	Right-handed 310
Helix 5	5	A	489	494	Right-handed 310
Helix 6	6	B	324	328	Right-handed 310
Helix 7	7	B	342	346	Right-handed 310
Helix 8	8	B	354	362	Right-handed alpha
Helix 9	9	B	489	494	Right-handed 310
Helix 10	10	C	324	328	Right-handed 310
Helix 11	11	C	342	346	Right-handed 310
Helix 12	12	C	354	362	Right-handed alpha
Helix 13	13	C	447	450	Right-handed 310
Helix 14	14	C	489	494	Right-handed 310
Helix 15	15	D	324	328	Right-handed 310
Helix 16	16	D	342	346	Right-handed 310
Helix 17	17	D	354	362	Right-handed alpha
Helix 18	18	D	489	494	Right-handed 310

There are 20 sheets in PDB entry 5FJZ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, CC, CD, CE, A, DB, C, DD, DE,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	380	389	anti-parallel
Strand 3	A	309	322	anti-parallel
Strand 4	A	291	303	anti-parallel
Strand 5	A	533	545	parallel
Strand 6	A	501	505	anti-parallel

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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	380	389	anti-parallel
Strand 3	A	309	322	anti-parallel
Strand 4	A	291	303	anti-parallel
Strand 5	A	533	545	parallel
Strand 6	A	496	499	anti-parallel
Strand 7	A	428	435	anti-parallel
Strand 8	A	466	473	anti-parallel
Strand 9	A	456	458	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	501	505	first strand
Strand 2	A	533	545	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	A	330	334	anti-parallel
Strand 3	A	517	522	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	407	first strand
Strand 2	A	413	422	anti-parallel
Strand 3	A	478	486	anti-parallel
Strand 4	A	444	445	anti-parallel

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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	349	first strand
Strand 2	B	380	389	anti-parallel
Strand 3	B	309	322	anti-parallel
Strand 4	B	291	304	anti-parallel
Strand 5	B	533	546	parallel
Strand 6	B	501	505	anti-parallel

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There are 9 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	349	first strand
Strand 2	B	380	389	anti-parallel
Strand 3	B	309	322	anti-parallel
Strand 4	B	291	304	anti-parallel
Strand 5	B	533	546	parallel
Strand 6	B	496	499	anti-parallel
Strand 7	B	428	435	parallel
Strand 8	B	466	473	anti-parallel
Strand 9	B	456	458	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	501	505	first strand
Strand 2	B	533	546	anti-parallel

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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	364	first strand
Strand 2	B	330	334	anti-parallel
Strand 3	B	517	522	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	406	first strand
Strand 2	B	415	422	anti-parallel
Strand 3	B	478	484	anti-parallel
Strand 4	B	444	445	anti-parallel

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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	349	first strand
Strand 2	C	380	389	anti-parallel
Strand 3	C	309	322	anti-parallel
Strand 4	C	291	303	anti-parallel
Strand 5	C	533	545	parallel
Strand 6	C	501	505	anti-parallel

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There are 9 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	349	first strand
Strand 2	C	380	389	anti-parallel
Strand 3	C	309	322	anti-parallel
Strand 4	C	291	303	anti-parallel
Strand 5	C	533	545	parallel
Strand 6	C	496	499	anti-parallel
Strand 7	C	428	435	parallel
Strand 8	C	466	473	anti-parallel
Strand 9	C	456	458	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	501	505	first strand
Strand 2	C	533	545	anti-parallel

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There are 4 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	364	first strand
Strand 2	C	330	334	anti-parallel
Strand 3	C	517	522	anti-parallel
Strand 4	C	525	529	anti-parallel

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There are 4 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	407	first strand
Strand 2	C	413	422	anti-parallel
Strand 3	C	478	486	anti-parallel
Strand 4	C	444	445	anti-parallel

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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	349	first strand
Strand 2	D	380	389	anti-parallel
Strand 3	D	309	322	anti-parallel
Strand 4	D	291	303	anti-parallel
Strand 5	D	533	545	parallel
Strand 6	D	501	505	anti-parallel

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There are 9 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	349	first strand
Strand 2	D	380	389	anti-parallel
Strand 3	D	309	322	anti-parallel
Strand 4	D	291	303	anti-parallel
Strand 5	D	533	545	parallel
Strand 6	D	496	499	anti-parallel
Strand 7	D	428	435	parallel
Strand 8	D	466	473	anti-parallel
Strand 9	D	455	458	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	501	505	first strand
Strand 2	D	533	545	anti-parallel

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There are 3 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	363	364	first strand
Strand 2	D	330	334	anti-parallel
Strand 3	D	517	522	anti-parallel

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There are 4 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	399	407	first strand
Strand 2	D	414	422	anti-parallel
Strand 3	D	478	485	anti-parallel
Strand 4	D	444	445	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FJZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FJZ