Analysis of interatomic Contacts of Structural Units in PDB entry:
5FK0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FK0 entry

There are 8 chains in PDB entry 5FK0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 284	GLN 546
B	ASP 284	GLN 546
C	ASP 284	GLN 546
D	ASP 284	GLN 546
E	ASP 284	GLN 546
F	ASP 284	GLN 546
G	ASP 284	GLN 546
H	ASP 284	GLN 546

There are 26 helices in PDB entry 5FK0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	342	346	Right-handed 310
Helix 2	2	A	354	362	Right-handed alpha
Helix 3	3	A	489	494	Right-handed 310
Helix 4	4	B	342	346	Right-handed 310
Helix 5	5	B	354	362	Right-handed alpha
Helix 6	6	B	489	494	Right-handed 310
Helix 7	7	C	342	346	Right-handed 310
Helix 8	8	C	354	362	Right-handed alpha
Helix 9	9	C	489	494	Right-handed 310
Helix 10	10	D	324	329	Right-handed alpha
Helix 11	11	D	342	346	Right-handed 310
Helix 12	12	D	354	362	Right-handed alpha
Helix 13	13	D	489	494	Right-handed 310
Helix 14	14	E	342	346	Right-handed 310
Helix 15	15	E	354	362	Right-handed alpha
Helix 16	16	E	489	494	Right-handed 310
Helix 17	17	F	324	329	Right-handed alpha
Helix 18	18	F	342	346	Right-handed 310
Helix 19	19	F	354	362	Right-handed alpha
Helix 20	20	F	489	494	Right-handed 310
Helix 21	21	G	342	346	Right-handed 310
Helix 22	22	G	354	362	Right-handed alpha
Helix 23	23	G	489	494	Right-handed 310
Helix 24	24	H	342	346	Right-handed 310
Helix 25	25	H	354	362	Right-handed alpha
Helix 26	26	H	489	494	Right-handed 310

There are 40 sheets in PDB entry 5FK0. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, CC, CD, CE, A, DB, C, DD, DE, EA, EB, EC, ED, EE, FA, FB, FC, FD, FE, GA, GB, GC, GD, GE, HA, HB, HC, HD, HE,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	380	389	anti-parallel
Strand 3	A	309	322	anti-parallel
Strand 4	A	291	303	anti-parallel
Strand 5	A	533	545	parallel
Strand 6	A	501	504	anti-parallel

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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	380	389	anti-parallel
Strand 3	A	309	322	anti-parallel
Strand 4	A	291	303	anti-parallel
Strand 5	A	533	545	parallel
Strand 6	A	496	499	anti-parallel
Strand 7	A	428	435	anti-parallel
Strand 8	A	466	473	anti-parallel
Strand 9	A	456	459	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	501	504	first strand
Strand 2	A	533	545	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	A	330	334	anti-parallel
Strand 3	A	517	522	anti-parallel
Strand 4	A	529	530	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	407	first strand
Strand 2	A	413	422	anti-parallel
Strand 3	A	478	486	anti-parallel
Strand 4	A	444	445	anti-parallel

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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	349	first strand
Strand 2	B	380	389	anti-parallel
Strand 3	B	309	322	anti-parallel
Strand 4	B	291	303	anti-parallel
Strand 5	B	533	545	parallel
Strand 6	B	501	504	anti-parallel

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There are 9 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	349	first strand
Strand 2	B	380	389	anti-parallel
Strand 3	B	309	322	anti-parallel
Strand 4	B	291	303	anti-parallel
Strand 5	B	533	545	parallel
Strand 6	B	496	499	anti-parallel
Strand 7	B	428	435	anti-parallel
Strand 8	B	466	473	anti-parallel
Strand 9	B	455	459	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	501	504	first strand
Strand 2	B	533	545	anti-parallel

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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	364	first strand
Strand 2	B	330	334	anti-parallel
Strand 3	B	517	522	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	407	first strand
Strand 2	B	413	422	anti-parallel
Strand 3	B	478	486	anti-parallel
Strand 4	B	444	445	anti-parallel

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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	349	first strand
Strand 2	C	380	389	anti-parallel
Strand 3	C	309	322	anti-parallel
Strand 4	C	291	303	anti-parallel
Strand 5	C	533	545	parallel
Strand 6	C	501	504	anti-parallel

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There are 9 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	349	first strand
Strand 2	C	380	389	anti-parallel
Strand 3	C	309	322	anti-parallel
Strand 4	C	291	303	anti-parallel
Strand 5	C	533	545	parallel
Strand 6	C	496	499	anti-parallel
Strand 7	C	428	435	anti-parallel
Strand 8	C	466	473	anti-parallel
Strand 9	C	456	459	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	501	504	first strand
Strand 2	C	533	545	anti-parallel

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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	364	first strand
Strand 2	C	330	334	anti-parallel
Strand 3	C	517	522	anti-parallel

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There are 4 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	407	first strand
Strand 2	C	413	422	anti-parallel
Strand 3	C	478	486	anti-parallel
Strand 4	C	444	445	anti-parallel

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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	349	first strand
Strand 2	D	380	389	anti-parallel
Strand 3	D	309	322	anti-parallel
Strand 4	D	291	303	anti-parallel
Strand 5	D	533	545	parallel
Strand 6	D	503	504	anti-parallel

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There are 9 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	349	first strand
Strand 2	D	380	389	anti-parallel
Strand 3	D	309	322	anti-parallel
Strand 4	D	291	303	anti-parallel
Strand 5	D	533	545	parallel
Strand 6	D	496	499	anti-parallel
Strand 7	D	428	435	anti-parallel
Strand 8	D	466	473	anti-parallel
Strand 9	D	456	459	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	503	504	first strand
Strand 2	D	533	545	anti-parallel

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There are 4 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	363	364	first strand
Strand 2	D	330	334	anti-parallel
Strand 3	D	517	522	anti-parallel
Strand 4	D	529	530	anti-parallel

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There are 4 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	399	407	first strand
Strand 2	D	413	422	anti-parallel
Strand 3	D	478	486	anti-parallel
Strand 4	D	444	445	anti-parallel

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There are 6 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	348	349	first strand
Strand 2	E	380	389	anti-parallel
Strand 3	E	309	322	anti-parallel
Strand 4	E	291	303	anti-parallel
Strand 5	E	533	545	parallel
Strand 6	E	501	504	anti-parallel

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There are 9 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	348	349	first strand
Strand 2	E	380	389	anti-parallel
Strand 3	E	309	322	anti-parallel
Strand 4	E	291	303	anti-parallel
Strand 5	E	533	545	parallel
Strand 6	E	496	499	anti-parallel
Strand 7	E	428	435	anti-parallel
Strand 8	E	466	473	anti-parallel
Strand 9	E	456	459	anti-parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	501	504	first strand
Strand 2	E	533	545	anti-parallel

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There are 3 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	363	364	first strand
Strand 2	E	330	334	anti-parallel
Strand 3	E	517	522	anti-parallel

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There are 4 strands in EE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	399	407	first strand
Strand 2	E	413	422	anti-parallel
Strand 3	E	478	486	anti-parallel
Strand 4	E	444	445	anti-parallel

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There are 6 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	348	349	first strand
Strand 2	F	380	389	anti-parallel
Strand 3	F	309	322	anti-parallel
Strand 4	F	291	303	anti-parallel
Strand 5	F	533	545	parallel
Strand 6	F	501	504	anti-parallel

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There are 9 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	348	349	first strand
Strand 2	F	380	389	anti-parallel
Strand 3	F	309	322	anti-parallel
Strand 4	F	291	303	anti-parallel
Strand 5	F	533	545	parallel
Strand 6	F	496	499	anti-parallel
Strand 7	F	428	435	anti-parallel
Strand 8	F	466	473	anti-parallel
Strand 9	F	456	459	anti-parallel

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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	501	504	first strand
Strand 2	F	533	545	anti-parallel

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There are 3 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	363	364	first strand
Strand 2	F	330	334	anti-parallel
Strand 3	F	517	522	anti-parallel

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There are 4 strands in FE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	399	407	first strand
Strand 2	F	413	422	anti-parallel
Strand 3	F	478	486	anti-parallel
Strand 4	F	444	445	anti-parallel

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There are 6 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	348	349	first strand
Strand 2	G	380	389	anti-parallel
Strand 3	G	309	322	anti-parallel
Strand 4	G	291	303	anti-parallel
Strand 5	G	533	545	parallel
Strand 6	G	501	504	anti-parallel

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There are 9 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	348	349	first strand
Strand 2	G	380	389	anti-parallel
Strand 3	G	309	322	anti-parallel
Strand 4	G	291	303	anti-parallel
Strand 5	G	533	545	parallel
Strand 6	G	496	499	anti-parallel
Strand 7	G	428	435	anti-parallel
Strand 8	G	466	473	anti-parallel
Strand 9	G	456	459	anti-parallel

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There are 2 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	501	504	first strand
Strand 2	G	533	545	anti-parallel

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There are 3 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	363	364	first strand
Strand 2	G	330	334	anti-parallel
Strand 3	G	517	522	anti-parallel

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There are 4 strands in GE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	399	407	first strand
Strand 2	G	413	422	anti-parallel
Strand 3	G	478	486	anti-parallel
Strand 4	G	444	445	anti-parallel

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There are 6 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	348	349	first strand
Strand 2	H	380	389	anti-parallel
Strand 3	H	309	322	anti-parallel
Strand 4	H	291	303	anti-parallel
Strand 5	H	533	545	parallel
Strand 6	H	503	504	anti-parallel

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There are 9 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	348	349	first strand
Strand 2	H	380	389	anti-parallel
Strand 3	H	309	322	anti-parallel
Strand 4	H	291	303	anti-parallel
Strand 5	H	533	545	parallel
Strand 6	H	496	499	anti-parallel
Strand 7	H	428	435	anti-parallel
Strand 8	H	466	473	anti-parallel
Strand 9	H	456	459	anti-parallel

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There are 2 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	503	504	first strand
Strand 2	H	533	545	anti-parallel

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There are 3 strands in HD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	363	364	first strand
Strand 2	H	330	334	anti-parallel
Strand 3	H	517	522	anti-parallel

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There are 4 strands in HE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	399	407	first strand
Strand 2	H	413	422	anti-parallel
Strand 3	H	478	486	anti-parallel
Strand 4	H	444	445	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FK0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FK0