Analysis of interatomic Contacts of Structural Units in PDB entry:
5FKC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FKC entry

There are 2 chains in PDB entry 5FKC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 42TYR 665
B
 CYS 42TYR 665
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5FKC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 56Right-handed 310
Helix 2
2
A
153 157Right-handed 310
Helix 3
3
A
227 235Right-handed alpha
Helix 4
4
A
237 242Right-handed alpha
Helix 5
5
A
339 341Right-handed 310
Helix 6
6
A
403 408Right-handed alpha
Helix 7
7
A
433 437Right-handed 310
Helix 8
8
A
461 472Right-handed alpha
Helix 9
9
A
654 660Right-handed alpha
Helix 10
10
B
52 56Right-handed 310
Helix 11
11
B
153 157Right-handed 310
Helix 12
12
B
227 235Right-handed alpha
Helix 13
13
B
237 242Right-handed alpha
Helix 14
14
B
339 341Right-handed 310
Helix 15
15
B
403 408Right-handed alpha
Helix 16
16
B
461 472Right-handed alpha
Helix 17
17
B
654 660Right-handed alpha
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There are 32 sheets in PDB entry 5FKC. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN, BO, BP,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
109 115parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
109 115anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 410first strand
Strand 2
A
76 86parallel
Strand 3
A
92 99anti-parallel
Strand 4
A
109 115anti-parallel
Strand 5
A
122 123parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 410first strand
Strand 2
A
76 86parallel
Strand 3
A
92 99anti-parallel
Strand 4
A
109 115anti-parallel
Strand 5
A
131 133anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 150first strand
Strand 2
A
159 165anti-parallel
Strand 3
A
181 187anti-parallel
Strand 4
A
196 197anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 225first strand
Strand 2
A
248 255anti-parallel
Strand 3
A
260 267anti-parallel
Strand 4
A
276 284anti-parallel
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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 315first strand
Strand 2
A
301 311anti-parallel
Strand 3
A
326 334anti-parallel
Strand 4
A
343 354anti-parallel
Strand 5
A
360 369anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 383first strand
Strand 2
A
387 394anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 413first strand
Strand 2
A
387 394parallel
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There are 5 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 444first strand
Strand 2
A
451 460anti-parallel
Strand 3
A
417 427anti-parallel
Strand 4
A
387 394anti-parallel
Strand 5
A
412 413parallel
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There are 5 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 444first strand
Strand 2
A
451 460anti-parallel
Strand 3
A
417 427anti-parallel
Strand 4
A
387 394anti-parallel
Strand 5
A
375 383anti-parallel
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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 476first strand
Strand 2
A
623 632anti-parallel
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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 482first strand
Strand 2
A
623 632anti-parallel
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There are 6 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 599first strand
Strand 2
A
585 590anti-parallel
Strand 3
A
572 582anti-parallel
Strand 4
A
500 510anti-parallel
Strand 5
A
623 632anti-parallel
Strand 6
A
480 482anti-parallel
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There are 6 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 599first strand
Strand 2
A
585 590anti-parallel
Strand 3
A
572 582anti-parallel
Strand 4
A
500 510anti-parallel
Strand 5
A
623 632anti-parallel
Strand 6
A
473 476anti-parallel
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There are 6 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 491first strand
Strand 2
A
609 615anti-parallel
Strand 3
A
516 523anti-parallel
Strand 4
A
529 534anti-parallel
Strand 5
A
539 543anti-parallel
Strand 6
A
558 561anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 123first strand
Strand 2
B
109 115parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 133first strand
Strand 2
B
109 115anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
409 410first strand
Strand 2
B
76 86parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
109 115anti-parallel
Strand 5
B
122 123parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
409 410first strand
Strand 2
B
76 86parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
109 115anti-parallel
Strand 5
B
131 133anti-parallel
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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 150first strand
Strand 2
B
159 165anti-parallel
Strand 3
B
181 187anti-parallel
Strand 4
B
196 197anti-parallel
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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 225first strand
Strand 2
B
248 255anti-parallel
Strand 3
B
260 267anti-parallel
Strand 4
B
276 284anti-parallel
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There are 5 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 315first strand
Strand 2
B
301 311anti-parallel
Strand 3
B
326 334anti-parallel
Strand 4
B
343 354anti-parallel
Strand 5
B
360 369anti-parallel
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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
375 383first strand
Strand 2
B
387 394anti-parallel
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There are 2 strands in BI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
412 413first strand
Strand 2
B
387 394parallel
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There are 5 strands in BJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
441 444first strand
Strand 2
B
451 460anti-parallel
Strand 3
B
417 427anti-parallel
Strand 4
B
387 394anti-parallel
Strand 5
B
412 413parallel
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There are 5 strands in BK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
441 444first strand
Strand 2
B
451 460anti-parallel
Strand 3
B
417 427anti-parallel
Strand 4
B
387 394anti-parallel
Strand 5
B
375 383anti-parallel
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There are 2 strands in BL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
473 476first strand
Strand 2
B
623 632anti-parallel
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There are 2 strands in BM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
480 482first strand
Strand 2
B
623 632anti-parallel
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There are 6 strands in BN sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
594 599first strand
Strand 2
B
585 590anti-parallel
Strand 3
B
572 582anti-parallel
Strand 4
B
500 510anti-parallel
Strand 5
B
623 632anti-parallel
Strand 6
B
480 482anti-parallel
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There are 6 strands in BO sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
594 599first strand
Strand 2
B
585 590anti-parallel
Strand 3
B
572 582anti-parallel
Strand 4
B
500 510anti-parallel
Strand 5
B
623 632anti-parallel
Strand 6
B
473 476anti-parallel
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There are 6 strands in BP sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
489 491first strand
Strand 2
B
609 615anti-parallel
Strand 3
B
516 523anti-parallel
Strand 4
B
529 534anti-parallel
Strand 5
B
539 543anti-parallel
Strand 6
B
558 561anti-parallel
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