Analysis of interatomic Contacts of Structural Units in PDB entry:
5FKJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FKJ entry

There are 3 chains in PDB entry 5FKJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 3	THR 543
B	GLU 4	SER 541
C	GLU 4	SER 208

There are104 helices in PDB entry 5FKJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	42	46	Right-handed 310
Helix 2	2	A	80	85	Right-handed alpha
Helix 3	3	A	130	134	Right-handed 310
Helix 4	4	A	135	143	Right-handed alpha
Helix 5	5	A	153	159	Right-handed alpha
Helix 6	6	A	170	187	Right-handed alpha
Helix 7	7	A	188	190	Right-handed 310
Helix 8	8	A	203	215	Right-handed alpha
Helix 9	9	A	215	220	Right-handed alpha
Helix 10	10	A	240	255	Right-handed alpha
Helix 11	11	A	265	274	Right-handed alpha
Helix 12	12	A	277	284	Right-handed alpha
Helix 13	13	A	285	289	Right-handed 310
Helix 14	14	A	311	319	Right-handed alpha
Helix 15	15	A	335	342	Right-handed 310
Helix 16	16	A	355	367	Right-handed alpha
Helix 17	17	A	371	383	Right-handed alpha
Helix 18	18	A	390	407	Right-handed alpha
Helix 19	19	A	407	421	Right-handed alpha
Helix 20	20	A	440	444	Right-handed 310
Helix 21	21	A	450	455	Right-handed alpha
Helix 22	22	A	456	460	Right-handed 310
Helix 23	23	A	460	464	Right-handed 310
Helix 24	24	A	466	487	Right-handed alpha
Helix 25	25	A	525	534	Right-handed alpha
Helix 26	26	A	535	540	Right-handed 310
Helix 27	27	B	42	46	Right-handed 310
Helix 28	28	B	80	85	Right-handed alpha
Helix 29	29	B	130	134	Right-handed 310
Helix 30	30	B	135	143	Right-handed alpha
Helix 31	31	B	153	159	Right-handed alpha
Helix 32	32	B	170	187	Right-handed alpha
Helix 33	33	B	188	190	Right-handed 310
Helix 34	34	B	203	215	Right-handed alpha
Helix 35	35	B	216	221	Right-handed 310
Helix 36	36	B	240	255	Right-handed alpha
Helix 37	37	B	265	275	Right-handed alpha
Helix 38	38	B	277	284	Right-handed alpha
Helix 39	39	B	285	289	Right-handed 310
Helix 40	40	B	311	319	Right-handed alpha
Helix 41	41	B	336	342	Right-handed 310
Helix 42	42	B	355	367	Right-handed alpha
Helix 43	43	B	371	383	Right-handed alpha
Helix 44	44	B	390	407	Right-handed alpha
Helix 45	45	B	407	421	Right-handed alpha
Helix 46	46	B	440	444	Right-handed 310
Helix 47	47	B	450	455	Right-handed alpha
Helix 48	48	B	456	460	Right-handed 310
Helix 49	49	B	460	464	Right-handed 310
Helix 50	50	B	466	487	Right-handed alpha
Helix 51	51	B	525	534	Right-handed alpha
Helix 52	52	B	534	541	Right-handed alpha
Helix 53	53	C	42	46	Right-handed 310
Helix 54	54	C	80	85	Right-handed alpha
Helix 55	55	C	130	134	Right-handed 310
Helix 56	56	C	135	143	Right-handed alpha
Helix 57	57	C	154	159	Right-handed alpha
Helix 58	58	C	170	187	Right-handed alpha
Helix 59	59	C	188	190	Right-handed 310
Helix 60	60	C	203	215	Right-handed alpha
Helix 61	61	C	216	222	Right-handed 310
Helix 62	62	C	240	255	Right-handed alpha
Helix 63	63	C	265	274	Right-handed alpha
Helix 64	64	C	277	285	Right-handed alpha
Helix 65	65	C	286	289	Right-handed 310
Helix 66	66	C	311	319	Right-handed alpha
Helix 67	67	C	335	342	Right-handed 310
Helix 68	68	C	355	367	Right-handed alpha
Helix 69	69	C	371	383	Right-handed alpha
Helix 70	70	C	390	407	Right-handed alpha
Helix 71	71	C	407	421	Right-handed alpha
Helix 72	72	C	440	444	Right-handed 310
Helix 73	73	C	450	455	Right-handed alpha
Helix 74	74	C	456	460	Right-handed 310
Helix 75	75	C	460	464	Right-handed 310
Helix 76	76	C	466	487	Right-handed alpha
Helix 77	77	C	525	534	Right-handed alpha
Helix 78	78	C	535	539	Right-handed 310
Helix 79	79	D	5	7	Right-handed 310
Helix 80	80	D	42	46	Right-handed 310
Helix 81	81	D	80	85	Right-handed alpha
Helix 82	82	D	130	134	Right-handed 310
Helix 83	83	D	135	143	Right-handed alpha
Helix 84	84	D	153	159	Right-handed alpha
Helix 85	85	D	170	187	Right-handed alpha
Helix 86	86	D	188	190	Right-handed 310
Helix 87	87	D	203	215	Right-handed alpha
Helix 88	88	D	216	222	Right-handed 310
Helix 89	89	D	240	255	Right-handed alpha
Helix 90	90	D	265	274	Right-handed alpha
Helix 91	91	D	277	285	Right-handed alpha
Helix 92	92	D	286	289	Right-handed 310
Helix 93	93	D	311	319	Right-handed alpha
Helix 94	94	D	336	342	Right-handed 310
Helix 95	95	D	355	367	Right-handed alpha
Helix 96	96	D	371	383	Right-handed alpha
Helix 97	97	D	390	407	Right-handed alpha
Helix 98	98	D	407	421	Right-handed alpha
Helix 99	99	D	440	444	Right-handed 310
Helix 100	100	D	450	455	Right-handed alpha
Helix 101	101	D	456	460	Right-handed 310
Helix 102	102	D	460	464	Right-handed 310
Helix 103	103	D	466	487	Right-handed alpha
Helix 104	104	D	525	539	Right-handed alpha

There are 13 sheets in PDB entry 5FKJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, CD, A, DB, C,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	15	18	anti-parallel
Strand 3	A	59	61	parallel

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There are 11 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	24	first strand
Strand 2	A	27	36	anti-parallel
Strand 3	A	98	104	anti-parallel
Strand 4	A	145	149	anti-parallel
Strand 5	A	112	118	parallel
Strand 6	A	192	202	parallel
Strand 7	A	224	228	parallel
Strand 8	A	325	331	parallel
Strand 9	A	424	430	parallel
Strand 10	A	509	513	parallel
Strand 11	A	519	522	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	69	first strand
Strand 2	A	92	93	parallel

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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	15	18	anti-parallel
Strand 3	B	59	61	parallel

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There are 11 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	24	first strand
Strand 2	B	27	35	anti-parallel
Strand 3	B	99	104	anti-parallel
Strand 4	B	145	149	anti-parallel
Strand 5	B	112	118	parallel
Strand 6	B	192	202	parallel
Strand 7	B	224	228	parallel
Strand 8	B	325	331	parallel
Strand 9	B	424	430	parallel
Strand 10	B	509	513	parallel
Strand 11	B	519	522	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	92	93	parallel

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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	11	first strand
Strand 2	C	16	18	anti-parallel
Strand 3	C	59	61	parallel

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There are 11 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	24	first strand
Strand 2	C	27	36	anti-parallel
Strand 3	C	98	104	anti-parallel
Strand 4	C	145	149	anti-parallel
Strand 5	C	112	118	parallel
Strand 6	C	192	202	parallel
Strand 7	C	224	228	parallel
Strand 8	C	325	331	parallel
Strand 9	C	424	430	parallel
Strand 10	C	509	513	parallel
Strand 11	C	519	522	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	39	first strand
Strand 2	C	51	52	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	69	first strand
Strand 2	C	92	93	parallel

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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	11	first strand
Strand 2	D	16	18	anti-parallel
Strand 3	D	59	61	parallel

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There are 11 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	24	first strand
Strand 2	D	27	36	anti-parallel
Strand 3	D	98	104	anti-parallel
Strand 4	D	145	149	anti-parallel
Strand 5	D	112	118	parallel
Strand 6	D	192	202	parallel
Strand 7	D	224	228	parallel
Strand 8	D	325	331	parallel
Strand 9	D	424	430	parallel
Strand 10	D	509	513	parallel
Strand 11	D	519	522	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	69	first strand
Strand 2	D	92	93	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FKJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FKJ