Analysis of interatomic Contacts of Structural Units in PDB entry:
5FKT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FKT entry

There are 2 chains in PDB entry 5FKT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 35	ALA 765
B	MET 33	ALA 765

There are 8 helices in PDB entry 5FKT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	95	99	Right-handed 310
Helix 2	2	A	230	233	Right-handed 310
Helix 3	3	A	392	397	Right-handed 310
Helix 4	4	A	441	448	Right-handed 310
Helix 5	5	B	95	99	Right-handed 310
Helix 6	6	B	230	233	Right-handed 310
Helix 7	7	B	392	397	Right-handed 310
Helix 8	8	B	441	448	Right-handed 310

There are 30 sheets in PDB entry 5FKT. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN, BO,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	43	first strand
Strand 2	A	759	764	anti-parallel
Strand 3	A	750	753	anti-parallel
Strand 4	A	740	742	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	57	first strand
Strand 2	A	65	68	anti-parallel
Strand 3	A	74	78	anti-parallel
Strand 4	A	83	86	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	106	first strand
Strand 2	A	114	118	anti-parallel
Strand 3	A	131	135	anti-parallel
Strand 4	A	143	146	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	166	first strand
Strand 2	A	174	177	anti-parallel
Strand 3	A	184	187	anti-parallel
Strand 4	A	195	196	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	228	first strand
Strand 2	A	242	246	anti-parallel
Strand 3	A	253	256	anti-parallel
Strand 4	A	264	265	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	281	first strand
Strand 2	A	286	292	anti-parallel
Strand 3	A	303	309	anti-parallel
Strand 4	A	314	317	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	337	first strand
Strand 2	A	345	350	anti-parallel
Strand 3	A	359	362	anti-parallel
Strand 4	A	370	371	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	375	first strand
Strand 2	A	381	383	anti-parallel

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There are 5 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	387	first strand
Strand 2	A	451	455	parallel
Strand 3	A	436	439	anti-parallel
Strand 4	A	428	431	anti-parallel
Strand 5	A	418	420	anti-parallel

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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	469	first strand
Strand 2	A	477	481	anti-parallel
Strand 3	A	488	489	anti-parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	514	first strand
Strand 2	A	517	527	anti-parallel
Strand 3	A	530	536	anti-parallel
Strand 4	A	544	545	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	557	560	first strand
Strand 2	A	567	570	anti-parallel
Strand 3	A	578	580	anti-parallel
Strand 4	A	588	589	anti-parallel

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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	598	601	first strand
Strand 2	A	609	613	anti-parallel
Strand 3	A	616	620	anti-parallel
Strand 4	A	628	631	anti-parallel

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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	641	644	first strand
Strand 2	A	652	657	anti-parallel
Strand 3	A	663	668	anti-parallel
Strand 4	A	676	677	anti-parallel

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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	683	690	first strand
Strand 2	A	700	707	anti-parallel
Strand 3	A	710	716	anti-parallel
Strand 4	A	724	725	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	43	first strand
Strand 2	B	759	764	anti-parallel
Strand 3	B	750	753	anti-parallel
Strand 4	B	740	742	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	65	68	anti-parallel
Strand 3	B	74	78	anti-parallel
Strand 4	B	83	86	anti-parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	106	first strand
Strand 2	B	114	118	anti-parallel
Strand 3	B	131	135	anti-parallel
Strand 4	B	143	146	anti-parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	166	first strand
Strand 2	B	174	177	anti-parallel
Strand 3	B	184	187	anti-parallel
Strand 4	B	195	196	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	228	first strand
Strand 2	B	242	246	anti-parallel
Strand 3	B	253	256	anti-parallel
Strand 4	B	264	265	anti-parallel

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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	281	first strand
Strand 2	B	286	292	anti-parallel
Strand 3	B	305	309	anti-parallel
Strand 4	B	314	317	anti-parallel

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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	337	first strand
Strand 2	B	345	350	anti-parallel
Strand 3	B	359	362	anti-parallel
Strand 4	B	370	371	anti-parallel

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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	375	first strand
Strand 2	B	381	383	anti-parallel

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There are 5 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	387	first strand
Strand 2	B	451	455	parallel
Strand 3	B	436	439	anti-parallel
Strand 4	B	424	431	anti-parallel
Strand 5	B	418	421	anti-parallel

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There are 3 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	465	469	first strand
Strand 2	B	477	481	anti-parallel
Strand 3	B	488	489	anti-parallel

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There are 4 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	514	first strand
Strand 2	B	517	527	anti-parallel
Strand 3	B	530	536	anti-parallel
Strand 4	B	544	545	anti-parallel

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There are 4 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	554	560	first strand
Strand 2	B	567	572	anti-parallel
Strand 3	B	577	580	anti-parallel
Strand 4	B	588	590	anti-parallel

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There are 4 strands in BM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	598	601	first strand
Strand 2	B	609	613	anti-parallel
Strand 3	B	616	620	anti-parallel
Strand 4	B	628	631	anti-parallel

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There are 4 strands in BN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	644	first strand
Strand 2	B	652	657	anti-parallel
Strand 3	B	663	668	anti-parallel
Strand 4	B	676	677	anti-parallel

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There are 4 strands in BO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	683	690	first strand
Strand 2	B	700	707	anti-parallel
Strand 3	B	710	716	anti-parallel
Strand 4	B	724	725	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FKT

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FKT