Analysis of interatomic Contacts of Structural Units in PDB entry:
5FKW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FKW entry

There are 6 chains in PDB entry 5FKW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 927
B	MET 1	LEU 366
C	MET 1	LEU 366
D	ARG 7	ALA 243
P	G 1	C 25
T	G 12	C 37

There are 81 helices in PDB entry 5FKW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	13	17	Right-handed 310
Helix 2	2	A	23	34	Right-handed alpha
Helix 3	3	A	49	61	Right-handed alpha
Helix 4	4	A	90	108	Right-handed alpha
Helix 5	5	A	119	124	Right-handed alpha
Helix 6	6	A	133	136	Right-handed 310
Helix 7	7	A	137	146	Right-handed alpha
Helix 8	8	A	147	162	Right-handed alpha
Helix 9	9	A	177	193	Right-handed alpha
Helix 10	10	A	206	208	Right-handed 310
Helix 11	11	A	209	222	Right-handed alpha
Helix 12	12	A	242	250	Right-handed alpha
Helix 13	13	A	253	267	Right-handed alpha
Helix 14	14	A	287	308	Right-handed alpha
Helix 15	15	A	310	318	Right-handed alpha
Helix 16	16	A	318	336	Right-handed alpha
Helix 17	17	A	337	354	Right-handed alpha
Helix 18	18	A	364	367	Right-handed 310
Helix 19	19	A	368	374	Right-handed alpha
Helix 20	20	A	387	391	Right-handed 310
Helix 21	21	A	407	409	Right-handed 310
Helix 22	22	A	410	423	Right-handed alpha
Helix 23	23	A	437	449	Right-handed alpha
Helix 24	24	A	452	461	Right-handed alpha
Helix 25	25	A	470	478	Right-handed alpha
Helix 26	26	A	479	488	Right-handed alpha
Helix 27	27	A	488	502	Right-handed alpha
Helix 28	28	A	521	525	Right-handed 310
Helix 29	29	A	543	549	Right-handed alpha
Helix 30	30	A	561	579	Right-handed alpha
Helix 31	31	A	585	589	Right-handed 310
Helix 32	32	A	593	602	Right-handed alpha
Helix 33	33	A	613	624	Right-handed alpha
Helix 34	34	A	627	638	Right-handed alpha
Helix 35	35	A	639	644	Right-handed alpha
Helix 36	36	A	646	656	Right-handed alpha
Helix 37	37	A	670	672	Right-handed 310
Helix 38	38	A	673	678	Right-handed alpha
Helix 39	39	A	679	681	Right-handed 310
Helix 40	40	A	686	697	Right-handed alpha
Helix 41	41	A	701	715	Right-handed alpha
Helix 42	42	A	716	734	Right-handed alpha
Helix 43	43	A	737	753	Right-handed alpha
Helix 44	44	A	757	777	Right-handed alpha
Helix 45	45	A	781	790	Right-handed alpha
Helix 46	46	A	793	808	Right-handed alpha
Helix 47	47	A	842	856	Right-handed alpha
Helix 48	48	A	861	869	Right-handed alpha
Helix 49	49	A	875	886	Right-handed alpha
Helix 50	50	A	896	918	Right-handed alpha
Helix 51	51	B	7	18	Right-handed alpha
Helix 52	52	B	27	30	Right-handed 310
Helix 53	53	B	72	82	Right-handed alpha
Helix 54	54	B	112	116	Right-handed 310
Helix 55	55	B	132	141	Right-handed alpha
Helix 56	56	B	142	146	Right-handed 310
Helix 57	57	B	152	155	Right-handed 310
Helix 58	58	B	197	207	Right-handed alpha
Helix 59	59	B	243	248	Right-handed alpha
Helix 60	60	B	260	272	Right-handed alpha
Helix 61	61	B	321	331	Right-handed alpha
Helix 62	62	C	7	19	Right-handed alpha
Helix 63	63	C	27	30	Right-handed 310
Helix 64	64	C	72	81	Right-handed alpha
Helix 65	65	C	112	116	Right-handed 310
Helix 66	66	C	132	141	Right-handed alpha
Helix 67	67	C	142	146	Right-handed 310
Helix 68	68	C	197	207	Right-handed alpha
Helix 69	69	C	243	248	Right-handed alpha
Helix 70	70	C	260	273	Right-handed alpha
Helix 71	71	C	321	331	Right-handed alpha
Helix 72	72	D	59	67	Right-handed alpha
Helix 73	73	D	69	73	Right-handed 310
Helix 74	74	D	82	91	Right-handed alpha
Helix 75	75	D	99	115	Right-handed alpha
Helix 76	76	D	120	124	Right-handed 310
Helix 77	77	D	130	138	Right-handed alpha
Helix 78	78	D	144	152	Right-handed alpha
Helix 79	79	D	163	179	Right-handed alpha
Helix 80	80	D	218	237	Right-handed alpha
Helix 81	81	D	239	243	Right-handed 310

There are 17 sheets in PDB entry 5FKW. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, CA, CB, A, DB, C, DD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	41	first strand
Strand 2	A	63	73	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	A	63	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	198	first strand
Strand 2	A	166	170	parallel
Strand 3	A	128	131	parallel
Strand 4	A	82	88	anti-parallel
Strand 5	A	63	73	anti-parallel
Strand 6	A	116	117	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	198	first strand
Strand 2	A	166	170	parallel
Strand 3	A	128	131	parallel
Strand 4	A	82	88	anti-parallel
Strand 5	A	63	73	anti-parallel
Strand 6	A	38	41	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	406	first strand
Strand 2	A	552	556	parallel
Strand 3	A	514	517	anti-parallel
Strand 4	A	427	431	anti-parallel
Strand 5	A	538	542	parallel
Strand 6	A	528	529	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	434	435	first strand
Strand 2	A	505	507	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	6	first strand
Strand 2	B	87	93	anti-parallel
Strand 3	B	96	101	anti-parallel
Strand 4	B	104	109	anti-parallel
Strand 5	C	301	307	anti-parallel
Strand 6	C	289	295	anti-parallel
Strand 7	C	280	286	anti-parallel
Strand 8	C	315	320	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	71	first strand
Strand 2	B	32	38	anti-parallel
Strand 3	B	41	47	anti-parallel
Strand 4	B	51	58	anti-parallel
Strand 5	B	230	235	anti-parallel
Strand 6	B	222	227	anti-parallel
Strand 7	B	213	219	anti-parallel
Strand 8	B	124	131	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	172	first strand
Strand 2	B	176	196	anti-parallel
Strand 3	B	357	361	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	311	first strand
Strand 2	B	254	259	anti-parallel
Strand 3	B	335	340	anti-parallel
Strand 4	B	348	351	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	320	first strand
Strand 2	B	280	286	anti-parallel
Strand 3	B	289	294	anti-parallel
Strand 4	B	301	307	anti-parallel
Strand 5	C	104	109	anti-parallel
Strand 6	C	96	101	anti-parallel
Strand 7	C	87	93	anti-parallel
Strand 8	C	2	6	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	71	first strand
Strand 2	C	32	38	anti-parallel
Strand 3	C	41	47	anti-parallel
Strand 4	C	51	58	anti-parallel
Strand 5	C	230	235	anti-parallel
Strand 6	C	222	227	anti-parallel
Strand 7	C	213	218	anti-parallel
Strand 8	C	126	131	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	196	first strand
Strand 2	C	157	163	anti-parallel
Strand 3	C	166	172	anti-parallel
Strand 4	C	176	183	anti-parallel
Strand 5	C	357	361	anti-parallel
Strand 6	C	347	351	anti-parallel
Strand 7	C	335	340	anti-parallel
Strand 8	C	254	259	anti-parallel
Strand 9	C	309	311	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	15	first strand
Strand 2	D	30	39	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	43	first strand
Strand 2	D	30	39	parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	51	first strand
Strand 2	D	30	39	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	97	first strand
Strand 2	D	126	129	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FKW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FKW