Analysis of interatomic Contacts of Structural Units in PDB entry:
5FKZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FKZ entry

There is 1 chain in PDB entry 5FKZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 MET 1LYS 710
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5FKZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
E
12 29Right-handed alpha
Helix 2
2
E
38 49Right-handed alpha
Helix 3
3
E
59 74Right-handed alpha
Helix 4
4
E
90 94Right-handed 310
Helix 5
5
E
109 129Right-handed alpha
Helix 6
6
E
130 143Right-handed alpha
Helix 7
7
E
155 160Right-handed 310
Helix 8
8
E
161 172Right-handed alpha
Helix 9
9
E
172 178Right-handed alpha
Helix 10
10
E
184 188Right-handed 310
Helix 11
11
E
195 208Right-handed alpha
Helix 12
12
E
218 232Right-handed alpha
Helix 13
13
E
245 255Right-handed alpha
Helix 14
14
E
276 280Right-handed 310
Helix 15
15
E
281 292Right-handed alpha
Helix 16
16
E
314 322Right-handed alpha
Helix 17
17
E
336 340Right-handed 310
Helix 18
18
E
340 344Right-handed 310
Helix 19
19
E
385 396Right-handed alpha
Helix 20
20
E
402 417Right-handed alpha
Helix 21
21
E
417 446Right-handed alpha
Helix 22
22
E
510 521Right-handed alpha
Helix 23
23
E
542 563Right-handed alpha
Helix 24
24
E
565 570Right-handed alpha
Helix 25
25
E
570 577Right-handed alpha
Helix 26
26
E
577 582Right-handed alpha
Helix 27
27
E
585 601Right-handed alpha
Helix 28
28
E
601 610Right-handed alpha
Helix 29
29
E
619 629Right-handed alpha
Helix 30
30
E
638 640Right-handed 310
Helix 31
31
E
666 668Right-handed 310
Helix 32
32
E
669 683Right-handed alpha
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There are 8 sheets in PDB entry 5FKZ. Click on sheet of interest to get list of strands forming it: EA, EB, EC, ED, EE, EF, EG, EH,

There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
32 34first strand
Strand 2
E
3 6parallel
Strand 3
E
52 58parallel
Strand 4
E
79 82parallel
Strand 5
E
100 103parallel
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There are 7 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
212 216first strand
Strand 2
E
376 381anti-parallel
Strand 3
E
358 363anti-parallel
Strand 4
E
326 330parallel
Strand 5
E
300 304parallel
Strand 6
E
237 241parallel
Strand 7
E
258 262parallel
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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
265 266first strand
Strand 2
E
272 273anti-parallel
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There are 4 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
452 453first strand
Strand 2
E
490 494anti-parallel
Strand 3
E
532 536anti-parallel
Strand 4
E
527 528anti-parallel
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There are 2 strands in EE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
465 466first strand
Strand 2
E
485 486anti-parallel
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There are 2 strands in EF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
615 616first strand
Strand 2
E
663 664anti-parallel
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There are 3 strands in EG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
632 636first strand
Strand 2
E
704 709anti-parallel
Strand 3
E
697 698anti-parallel
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There are 2 strands in EH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
650 652first strand
Strand 2
E
692 694anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il