Analysis of interatomic Contacts of Structural Units in PDB entry:
5FLV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FLV entry

There are 10 chains in PDB entry 5FLV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 140	GLY 1238
B	C -1	G 19
C	C 5	A 24
E	VAL 142	ARG 1237
F	C -1	G 19
G	C 5	G 25
I	PRO 140	ARG 1237
J	C -1	G 19
K	A 4	G 25
M	VAL 142	LYS 1221

There are 32 helices in PDB entry 5FLV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	145	157	Right-handed alpha
Helix 2	2	A	163	174	Right-handed alpha
Helix 3	3	A	177	189	Right-handed alpha
Helix 4	4	A	1060	1069	Right-handed alpha
Helix 5	5	A	1145	1151	Right-handed alpha
Helix 6	6	A	1207	1210	Right-handed 310
Helix 7	7	A	1219	1228	Right-handed alpha
Helix 8	8	A	1230	1237	Right-handed 310
Helix 9	9	E	145	157	Right-handed alpha
Helix 10	10	E	163	174	Right-handed alpha
Helix 11	11	E	177	197	Right-handed alpha
Helix 12	12	E	1060	1069	Right-handed alpha
Helix 13	13	E	1145	1151	Right-handed alpha
Helix 14	14	E	1207	1210	Right-handed 310
Helix 15	15	E	1219	1228	Right-handed alpha
Helix 16	16	E	1230	1237	Right-handed 310
Helix 17	17	I	145	157	Right-handed alpha
Helix 18	18	I	163	174	Right-handed alpha
Helix 19	19	I	177	194	Right-handed alpha
Helix 20	20	I	1060	1069	Right-handed alpha
Helix 21	21	I	1145	1151	Right-handed alpha
Helix 22	22	I	1207	1210	Right-handed 310
Helix 23	23	I	1219	1228	Right-handed alpha
Helix 24	24	I	1230	1237	Right-handed 310
Helix 25	25	M	145	157	Right-handed alpha
Helix 26	26	M	163	174	Right-handed alpha
Helix 27	27	M	177	192	Right-handed alpha
Helix 28	28	M	1060	1069	Right-handed alpha
Helix 29	29	M	1145	1151	Right-handed alpha
Helix 30	30	M	1207	1210	Right-handed 310
Helix 31	31	M	1219	1228	Right-handed alpha
Helix 32	32	M	1230	1237	Right-handed 310

There are 34 sheets in PDB entry 5FLV. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, EA, EB, EC, ED, EE, EF, EG, EH, IA, IB, IC, ID, IE, IF, IG, IH, MA, MB, MC, MD, ME, MF, MG, MH, MI,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1055	1058	first strand
Strand 2	A	1088	1092	anti-parallel
Strand 3	A	1153	1154	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1073	1075	first strand
Strand 2	A	1211	1214	parallel
Strand 3	A	1177	1187	anti-parallel
Strand 4	A	1203	1205	anti-parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1073	1075	first strand
Strand 2	A	1211	1214	parallel
Strand 3	A	1177	1187	anti-parallel
Strand 4	A	1099	1116	anti-parallel
Strand 5	A	1121	1126	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1136	1137	first strand
Strand 2	A	1099	1116	anti-parallel

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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1073	1075	first strand
Strand 2	A	1211	1214	parallel
Strand 3	A	1177	1187	anti-parallel
Strand 4	A	1099	1116	anti-parallel
Strand 5	A	1136	1137	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1143	1144	first strand
Strand 2	A	1099	1116	anti-parallel

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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1073	1075	first strand
Strand 2	A	1211	1214	parallel
Strand 3	A	1177	1187	anti-parallel
Strand 4	A	1099	1116	anti-parallel
Strand 5	A	1143	1144	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1203	1205	first strand
Strand 2	A	1177	1187	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1081	1082	first strand
Strand 2	A	1159	1161	anti-parallel
Strand 3	A	1171	1172	parallel

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There are 3 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1055	1058	first strand
Strand 2	E	1088	1092	anti-parallel
Strand 3	E	1153	1154	anti-parallel

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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1073	1075	first strand
Strand 2	E	1211	1214	parallel
Strand 3	E	1177	1187	anti-parallel
Strand 4	E	1203	1205	anti-parallel

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There are 5 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1073	1075	first strand
Strand 2	E	1211	1214	parallel
Strand 3	E	1177	1187	anti-parallel
Strand 4	E	1099	1108	anti-parallel
Strand 5	E	1136	1137	anti-parallel

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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1143	1144	first strand
Strand 2	E	1099	1108	anti-parallel

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There are 5 strands in EE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1073	1075	first strand
Strand 2	E	1211	1214	parallel
Strand 3	E	1177	1187	anti-parallel
Strand 4	E	1099	1108	anti-parallel
Strand 5	E	1143	1144	anti-parallel

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There are 2 strands in EF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1203	1205	first strand
Strand 2	E	1177	1187	anti-parallel

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There are 3 strands in EG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1081	1082	first strand
Strand 2	E	1159	1161	anti-parallel
Strand 3	E	1171	1172	parallel

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There are 2 strands in EH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1112	1116	first strand
Strand 2	E	1121	1126	anti-parallel

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There are 4 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1073	1075	first strand
Strand 2	I	1211	1214	parallel
Strand 3	I	1177	1186	anti-parallel
Strand 4	I	1203	1205	anti-parallel

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There are 5 strands in IB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1073	1075	first strand
Strand 2	I	1211	1214	parallel
Strand 3	I	1177	1186	anti-parallel
Strand 4	I	1099	1108	anti-parallel
Strand 5	I	1136	1137	anti-parallel

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There are 2 strands in IC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1143	1144	first strand
Strand 2	I	1099	1108	anti-parallel

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There are 5 strands in ID sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1073	1075	first strand
Strand 2	I	1211	1214	parallel
Strand 3	I	1177	1186	anti-parallel
Strand 4	I	1099	1108	anti-parallel
Strand 5	I	1143	1144	anti-parallel

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There are 2 strands in IE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1203	1205	first strand
Strand 2	I	1177	1186	anti-parallel

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There are 3 strands in IF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1081	1082	first strand
Strand 2	I	1159	1161	anti-parallel
Strand 3	I	1171	1172	parallel

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There are 2 strands in IG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1088	1089	first strand
Strand 2	I	1153	1154	anti-parallel

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There are 2 strands in IH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1112	1116	first strand
Strand 2	I	1121	1126	anti-parallel

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There are 3 strands in MA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	1055	1058	first strand
Strand 2	M	1088	1092	anti-parallel
Strand 3	M	1153	1154	anti-parallel

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There are 4 strands in MB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	1073	1075	first strand
Strand 2	M	1211	1214	parallel
Strand 3	M	1177	1186	anti-parallel
Strand 4	M	1202	1205	anti-parallel

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There are 5 strands in MC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	1073	1075	first strand
Strand 2	M	1211	1214	parallel
Strand 3	M	1177	1186	anti-parallel
Strand 4	M	1099	1116	anti-parallel
Strand 5	M	1121	1126	anti-parallel

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There are 2 strands in MD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	1136	1137	first strand
Strand 2	M	1099	1116	anti-parallel

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There are 5 strands in ME sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	1073	1075	first strand
Strand 2	M	1211	1214	parallel
Strand 3	M	1177	1186	anti-parallel
Strand 4	M	1099	1116	anti-parallel
Strand 5	M	1136	1137	anti-parallel

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There are 2 strands in MF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	1143	1144	first strand
Strand 2	M	1099	1116	anti-parallel

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There are 5 strands in MG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	1073	1075	first strand
Strand 2	M	1211	1214	parallel
Strand 3	M	1177	1186	anti-parallel
Strand 4	M	1099	1116	anti-parallel
Strand 5	M	1143	1144	anti-parallel

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There are 2 strands in MH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	1202	1205	first strand
Strand 2	M	1177	1186	anti-parallel

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There are 3 strands in MI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	1081	1082	first strand
Strand 2	M	1159	1161	anti-parallel
Strand 3	M	1171	1172	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FLV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FLV