Analysis of interatomic Contacts of Structural Units in PDB entry:
5FLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FLY entry

There are 2 chains in PDB entry 5FLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3THR 281
B
 THR 5THR 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5FLY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 34Right-handed 310
Helix 2
2
A
35 42Right-handed alpha
Helix 3
3
A
52 55Right-handed 310
Helix 4
4
A
56 63Right-handed alpha
Helix 5
5
A
73 80Right-handed alpha
Helix 6
6
A
93 101Right-handed alpha
Helix 7
7
A
107 111Right-handed 310
Helix 8
8
A
112 125Right-handed alpha
Helix 9
9
A
126 153Right-handed alpha
Helix 10
10
A
178 184Right-handed alpha
Helix 11
11
A
191 199Right-handed alpha
Helix 12
12
A
207 215Right-handed 310
Helix 13
13
A
230 234Right-handed 310
Helix 14
14
A
235 240Right-handed alpha
Helix 15
15
A
241 246Right-handed alpha
Helix 16
16
A
254 258Right-handed alpha
Helix 17
17
A
261 279Right-handed alpha
Helix 18
18
B
32 34Right-handed 310
Helix 19
19
B
35 42Right-handed alpha
Helix 20
20
B
52 55Right-handed 310
Helix 21
21
B
56 63Right-handed alpha
Helix 22
22
B
73 80Right-handed alpha
Helix 23
23
B
93 101Right-handed alpha
Helix 24
24
B
107 111Right-handed 310
Helix 25
25
B
112 125Right-handed alpha
Helix 26
26
B
126 153Right-handed alpha
Helix 27
27
B
178 184Right-handed alpha
Helix 28
28
B
191 199Right-handed alpha
Helix 29
29
B
207 215Right-handed 310
Helix 30
30
B
230 234Right-handed 310
Helix 31
31
B
235 241Right-handed alpha
Helix 32
32
B
241 246Right-handed alpha
Helix 33
33
B
254 258Right-handed alpha
Helix 34
34
B
261 278Right-handed alpha
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There are 6 sheets in PDB entry 5FLY. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 12first strand
Strand 2
A
15 22anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 69first strand
Strand 2
A
46 50parallel
Strand 3
A
28 30parallel
Strand 4
A
84 88parallel
Strand 5
A
103 106parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 205first strand
Strand 2
A
167 171anti-parallel
Strand 3
A
158 164anti-parallel
Strand 4
A
218 223parallel
Strand 5
A
249 253parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 12first strand
Strand 2
B
15 21anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 69first strand
Strand 2
B
46 50parallel
Strand 3
B
28 30parallel
Strand 4
B
84 88parallel
Strand 5
B
103 106parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 205first strand
Strand 2
B
167 171anti-parallel
Strand 3
B
158 164anti-parallel
Strand 4
B
218 223parallel
Strand 5
B
249 253parallel
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