Analysis of interatomic Contacts of Structural Units in PDB entry:
5FM1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FM1 entry

There are 6 chains in PDB entry 5FM1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 55ASP 800
B
 PRO 180ARG 846
C
 MET 1TYR 445
D
 MET 1TYR 445
E
 UNK 1UNK 44
F
 UNK 1UNK 44
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 79 helices in PDB entry 5FM1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 68Right-handed alpha
Helix 2
2
A
99 127Right-handed alpha
Helix 3
3
A
132 165Right-handed alpha
Helix 4
4
A
169 205Right-handed alpha
Helix 5
5
A
243 259Right-handed alpha
Helix 6
6
A
261 276Right-handed alpha
Helix 7
7
A
276 290Right-handed alpha
Helix 8
8
A
337 360Right-handed alpha
Helix 9
9
A
372 383Right-handed alpha
Helix 10
10
A
386 412Right-handed alpha
Helix 11
11
A
414 426Right-handed alpha
Helix 12
12
A
432 448Right-handed alpha
Helix 13
13
A
453 469Right-handed alpha
Helix 14
14
A
476 481Right-handed alpha
Helix 15
15
A
555 559Right-handed alpha
Helix 16
16
A
575 608Right-handed alpha
Helix 17
17
A
623 651Right-handed alpha
Helix 18
18
A
651 665Right-handed alpha
Helix 19
19
A
668 690Right-handed alpha
Helix 20
20
A
692 712Right-handed alpha
Helix 21
21
A
754 785Right-handed alpha
Helix 22
22
A
787 799Right-handed alpha
Helix 23
23
B
180 193Right-handed alpha
Helix 24
24
B
214 242Right-handed alpha
Helix 25
25
B
247 274Right-handed alpha
Helix 26
26
B
279 287Right-handed alpha
Helix 27
27
B
287 305Right-handed alpha
Helix 28
28
B
310 322Right-handed alpha
Helix 29
29
B
324 353Right-handed alpha
Helix 30
30
B
395 416Right-handed alpha
Helix 31
31
B
422 437Right-handed alpha
Helix 32
32
B
441 466Right-handed alpha
Helix 33
33
B
469 482Right-handed alpha
Helix 34
34
B
485 502Right-handed alpha
Helix 35
35
B
505 523Right-handed alpha
Helix 36
36
B
567 571Right-handed 310
Helix 37
37
B
577 609Right-handed alpha
Helix 38
38
B
629 656Right-handed alpha
Helix 39
39
B
656 671Right-handed alpha
Helix 40
40
B
720 743Right-handed alpha
Helix 41
41
B
756 779Right-handed alpha
Helix 42
42
B
798 833Right-handed alpha
Helix 43
43
B
835 846Right-handed alpha
Helix 44
44
C
11 29Right-handed alpha
Helix 45
45
C
71 81Right-handed alpha
Helix 46
46
C
104 115Right-handed alpha
Helix 47
47
C
115 130Right-handed alpha
Helix 48
48
C
145 162Right-handed alpha
Helix 49
49
C
182 198Right-handed alpha
Helix 50
50
C
206 218Right-handed alpha
Helix 51
51
C
222 239Right-handed alpha
Helix 52
52
C
239 244Right-handed alpha
Helix 53
53
C
251 260Right-handed alpha
Helix 54
54
C
288 298Right-handed alpha
Helix 55
55
C
328 343Right-handed alpha
Helix 56
56
C
383 401Right-handed alpha
Helix 57
57
C
404 409Right-handed alpha
Helix 58
58
C
410 415Right-handed alpha
Helix 59
59
C
417 437Right-handed alpha
Helix 60
60
D
10 29Right-handed alpha
Helix 61
61
D
71 81Right-handed alpha
Helix 62
62
D
82 87Right-handed 310
Helix 63
63
D
88 90Right-handed 310
Helix 64
64
D
104 115Right-handed alpha
Helix 65
65
D
115 130Right-handed alpha
Helix 66
66
D
145 162Right-handed alpha
Helix 67
67
D
182 198Right-handed alpha
Helix 68
68
D
206 217Right-handed alpha
Helix 69
69
D
223 239Right-handed alpha
Helix 70
70
D
239 244Right-handed alpha
Helix 71
71
D
251 260Right-handed alpha
Helix 72
72
D
288 298Right-handed alpha
Helix 73
73
D
328 343Right-handed alpha
Helix 74
74
D
383 401Right-handed alpha
Helix 75
75
D
404 410Right-handed alpha
Helix 76
76
D
412 416Right-handed 310
Helix 77
77
D
417 437Right-handed alpha
Helix 78
78
E
1 44Right-handed alpha
Helix 79
79
F
1 44Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 5FM1. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, CA, CB, DA, DB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
92 93anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
324 326anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 486first strand
Strand 2
A
560 564anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 366first strand
Strand 2
B
383 385anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
541 545first strand
Strand 2
B
558 562anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 94first strand
Strand 2
C
66 70parallel
Strand 3
C
4 10parallel
Strand 4
C
133 141parallel
Strand 5
C
166 173parallel
Strand 6
C
200 205parallel
Strand 7
C
267 273parallel
Strand 8
C
373 380anti-parallel
Strand 9
C
316 324anti-parallel
Strand 10
C
355 360parallel
Back to list of sheets
Back to top of page

There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 55first strand
Strand 2
C
63 64anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
92 94first strand
Strand 2
D
66 70parallel
Strand 3
D
4 9parallel
Strand 4
D
133 141parallel
Strand 5
D
166 173parallel
Strand 6
D
200 205parallel
Strand 7
D
267 273parallel
Strand 8
D
373 380anti-parallel
Strand 9
D
316 325anti-parallel
Strand 10
D
355 361parallel
Back to list of sheets
Back to top of page

There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 55first strand
Strand 2
D
63 64anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il