Analysis of interatomic Contacts of Structural Units in PDB entry:
5FM2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FM2 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 5FM2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 710LYS 808
A
 GLY 810SER 904
A
 VAL 906ARG 908
A
 GLN 910ILE 927
A
 THR 929LYS 1011
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5FM2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
720 722Right-handed 310
Helix 2
2
A
746 749Right-handed 310
Helix 3
3
A
765 782Right-handed alpha
Helix 4
4
A
811 819Right-handed alpha
Helix 5
5
A
847 868Right-handed alpha
Helix 6
6
A
914 918Right-handed 310
Helix 7
7
A
919 926Right-handed alpha
Helix 8
8
A
929 946Right-handed alpha
Helix 9
9
A
956 958Right-handed 310
Helix 10
10
A
959 966Right-handed alpha
Helix 11
11
A
977 988Right-handed alpha
Helix 12
12
A
991 995Right-handed 310
Helix 13
13
A
997 1011Right-handed alpha
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There are 3 sheets in PDB entry 5FM2. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
724 732first strand
Strand 2
A
737 744anti-parallel
Strand 3
A
752 759anti-parallel
Strand 4
A
801 804anti-parallel
Strand 5
A
790 794anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
870 871first strand
Strand 2
A
897 898anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
880 883first strand
Strand 2
A
887 890anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il