Analysis of interatomic Contacts of Structural Units in PDB entry:
5FM6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FM6 entry

There are 2 chains in PDB entry 5FM6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3SER 450
B
 SER 8VAL 455
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5FM6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 20Right-handed 310
Helix 2
2
A
43 59Right-handed alpha
Helix 3
3
A
76 88Right-handed alpha
Helix 4
4
A
108 120Right-handed alpha
Helix 5
5
A
174 181Right-handed alpha
Helix 6
6
A
209 211Right-handed 310
Helix 7
7
A
241 248Right-handed alpha
Helix 8
8
A
273 290Right-handed alpha
Helix 9
9
A
304 308Right-handed 310
Helix 10
10
A
309 322Right-handed alpha
Helix 11
11
A
352 357Right-handed alpha
Helix 12
12
A
368 384Right-handed alpha
Helix 13
13
A
388 402Right-handed alpha
Helix 14
14
A
403 410Right-handed alpha
Helix 15
15
A
410 422Right-handed alpha
Helix 16
16
A
427 438Right-handed alpha
Helix 17
17
A
440 450Right-handed alpha
Helix 18
18
B
49 65Right-handed alpha
Helix 19
19
B
82 95Right-handed alpha
Helix 20
20
B
106 109Right-handed 310
Helix 21
21
B
114 125Right-handed alpha
Helix 22
22
B
174 184Right-handed alpha
Helix 23
23
B
243 250Right-handed alpha
Helix 24
24
B
268 286Right-handed alpha
Helix 25
25
B
300 303Right-handed 310
Helix 26
26
B
304 315Right-handed alpha
Helix 27
27
B
346 351Right-handed alpha
Helix 28
28
B
362 377Right-handed alpha
Helix 29
29
B
382 397Right-handed alpha
Helix 30
30
B
397 416Right-handed alpha
Helix 31
31
B
421 432Right-handed alpha
Helix 32
32
B
434 444Right-handed alpha
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There are 11 sheets in PDB entry 5FM6. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, BF,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 98first strand
Strand 2
A
299 303parallel
Strand 3
A
327 332parallel
Strand 4
A
66 71parallel
Strand 5
A
359 364parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 240first strand
Strand 2
A
121 130anti-parallel
Strand 3
A
293 297anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 170first strand
Strand 2
A
160 164anti-parallel
Strand 3
A
134 139anti-parallel
Strand 4
A
191 192anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
221 222parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 338first strand
Strand 2
A
346 348anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 104first strand
Strand 2
B
294 298parallel
Strand 3
B
322 327parallel
Strand 4
B
73 76parallel
Strand 5
B
354 357parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 172first strand
Strand 2
B
159 163parallel
Strand 3
B
127 144anti-parallel
Strand 4
B
190 195anti-parallel
Strand 5
B
201 206anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 172first strand
Strand 2
B
159 163parallel
Strand 3
B
127 144anti-parallel
Strand 4
B
232 242anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 292first strand
Strand 2
B
127 144anti-parallel
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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 172first strand
Strand 2
B
159 163parallel
Strand 3
B
127 144anti-parallel
Strand 4
B
288 292anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 333first strand
Strand 2
B
340 342anti-parallel
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