Analysis of interatomic Contacts of Structural Units in PDB entry:
5FM8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FM8 entry

There are 4 chains in PDB entry 5FM8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 508	ALA 608
B	SER 508	ALA 608
C	SER 508	ALA 608
D	SER 508	ALA 608

There are no helices in PDB entry 5FM8

There are 16 sheets in PDB entry 5FM8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	521	first strand
Strand 2	A	526	531	anti-parallel
Strand 3	A	568	571	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	556	558	first strand
Strand 2	A	543	550	anti-parallel
Strand 3	A	579	588	anti-parallel
Strand 4	A	591	592	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	556	558	first strand
Strand 2	A	543	550	anti-parallel
Strand 3	A	579	588	anti-parallel
Strand 4	A	602	603	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	592	first strand
Strand 2	A	579	588	anti-parallel

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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	514	521	first strand
Strand 2	B	526	531	anti-parallel
Strand 3	B	568	571	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	556	558	first strand
Strand 2	B	543	550	anti-parallel
Strand 3	B	579	588	anti-parallel
Strand 4	B	591	592	anti-parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	556	558	first strand
Strand 2	B	543	550	anti-parallel
Strand 3	B	579	588	anti-parallel
Strand 4	B	602	603	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	591	592	first strand
Strand 2	B	579	588	anti-parallel

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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	514	521	first strand
Strand 2	C	526	531	anti-parallel
Strand 3	C	569	571	anti-parallel

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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	556	558	first strand
Strand 2	C	543	550	anti-parallel
Strand 3	C	579	588	anti-parallel
Strand 4	C	591	592	anti-parallel

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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	556	558	first strand
Strand 2	C	543	550	anti-parallel
Strand 3	C	579	588	anti-parallel
Strand 4	C	602	603	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	591	592	first strand
Strand 2	C	579	588	anti-parallel

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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	514	521	first strand
Strand 2	D	526	531	anti-parallel
Strand 3	D	568	571	anti-parallel

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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	556	558	first strand
Strand 2	D	543	550	anti-parallel
Strand 3	D	579	588	anti-parallel
Strand 4	D	591	592	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	556	558	first strand
Strand 2	D	543	550	anti-parallel
Strand 3	D	579	588	anti-parallel
Strand 4	D	602	603	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	591	592	first strand
Strand 2	D	579	588	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FM8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FM8