Analysis of interatomic Contacts of Structural Units in PDB entry:
5FMO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FMO entry

There are 2 chains in PDB entry 5FMO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	MET 1	GLY 370
S	GLY 375	PHE 568

There are 9 helices in PDB entry 5FMO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	L	48	52	Right-handed 310
Helix 2	2	L	58	64	Right-handed alpha
Helix 3	3	L	103	108	Right-handed alpha
Helix 4	4	L	137	144	Right-handed alpha
Helix 5	5	L	230	237	Right-handed alpha
Helix 6	6	L	276	281	Right-handed 310
Helix 7	7	L	300	304	Right-handed 310
Helix 8	8	S	428	436	Right-handed alpha
Helix 9	9	S	456	460	Right-handed 310

There are 10 sheets in PDB entry 5FMO. Click on sheet of interest to get list of strands forming it: LA, LB, LC, LD, LE, LF, LG, LH, LI, SA,

There are 4 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	24	32	first strand
Strand 2	L	164	176	anti-parallel
Strand 3	L	70	77	anti-parallel
Strand 4	L	122	127	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in LB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	40	46	first strand
Strand 2	L	147	154	anti-parallel
Strand 3	L	87	93	anti-parallel
Strand 4	L	112	115	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in LC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	95	96	first strand
Strand 2	S	544	550	parallel
Strand 3	S	437	452	anti-parallel
Strand 4	S	530	539	anti-parallel
Strand 5	S	387	392	anti-parallel
Strand 6	S	422	425	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in LD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	95	96	first strand
Strand 2	S	544	550	parallel
Strand 3	S	437	452	anti-parallel
Strand 4	S	490	498	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in LE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	187	202	first strand
Strand 2	L	342	359	anti-parallel
Strand 3	L	239	252	anti-parallel
Strand 4	L	294	299	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in LF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	187	202	first strand
Strand 2	L	342	359	anti-parallel
Strand 3	L	239	252	anti-parallel
Strand 4	L	308	309	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in LG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	294	299	first strand
Strand 2	L	239	252	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in LH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	210	214	first strand
Strand 2	L	325	330	anti-parallel
Strand 3	L	262	267	anti-parallel
Strand 4	L	283	286	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in LI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	226	227	first strand
Strand 2	S	554	555	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in SA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	413	415	first strand
Strand 2	S	402	407	anti-parallel
Strand 3	S	519	524	anti-parallel
Strand 4	S	464	469	anti-parallel
Strand 5	S	480	484	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FMO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FMO