Analysis of interatomic Contacts of Structural Units in PDB entry:
5FMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FMP entry

There are 4 chains in PDB entry 5FMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 31ILE 214
B
 SER 32ILE 214
C
 C 1 A 16
D
 T 1 G 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 5FMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 54Right-handed alpha
Helix 2
2
A
55 58Right-handed 310
Helix 3
3
A
59 67Right-handed alpha
Helix 4
4
A
70 78Right-handed alpha
Helix 5
5
A
80 99Right-handed alpha
Helix 6
6
A
100 105Right-handed alpha
Helix 7
7
A
109 127Right-handed alpha
Helix 8
8
A
128 142Right-handed alpha
Helix 9
9
A
143 145Right-handed 310
Helix 10
10
A
146 166Right-handed alpha
Helix 11
11
A
171 194Right-handed alpha
Helix 12
12
A
198 213Right-handed alpha
Helix 13
13
B
32 58Right-handed alpha
Helix 14
14
B
59 68Right-handed alpha
Helix 15
15
B
70 78Right-handed alpha
Helix 16
16
B
80 100Right-handed alpha
Helix 17
17
B
102 106Right-handed 310
Helix 18
18
B
109 128Right-handed alpha
Helix 19
19
B
128 142Right-handed alpha
Helix 20
20
B
143 145Right-handed 310
Helix 21
21
B
146 167Right-handed alpha
Helix 22
22
B
171 194Right-handed alpha
Helix 23
23
B
198 213Right-handed alpha
Back to top of page
There are no sheets in PDB entry 5FMP
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il