Analysis of interatomic Contacts of Structural Units in PDB entry:
5FMQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FMQ entry

There is 1 chain in PDB entry 5FMQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 252LEU 675
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 5FMQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
252 273Right-handed alpha
Helix 2
2
A
275 287Right-handed alpha
Helix 3
3
A
294 301Right-handed alpha
Helix 4
4
A
305 315Right-handed alpha
Helix 5
5
A
390 406Right-handed alpha
Helix 6
6
A
407 413Right-handed alpha
Helix 7
7
A
429 441Right-handed alpha
Helix 8
8
A
442 450Right-handed alpha
Helix 9
9
A
533 539Right-handed 310
Helix 10
10
A
540 556Right-handed alpha
Helix 11
11
A
556 567Right-handed alpha
Helix 12
12
A
567 573Right-handed alpha
Helix 13
13
A
577 584Right-handed alpha
Helix 14
14
A
585 587Right-handed 310
Helix 15
15
A
588 607Right-handed alpha
Helix 16
16
A
612 619Right-handed alpha
Helix 17
17
A
620 624Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 5FMQ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 293first strand
Strand 2
A
288 289anti-parallel
Strand 3
A
529 530anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 320first strand
Strand 2
A
493 494anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 325first strand
Strand 2
A
328 335anti-parallel
Strand 3
A
361 366anti-parallel
Strand 4
A
370 377anti-parallel
Strand 5
A
380 388anti-parallel
Strand 6
A
478 481parallel
Strand 7
A
460 463anti-parallel
Strand 8
A
469 470anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 345first strand
Strand 2
A
351 358anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 453first strand
Strand 2
A
473 475anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
497 498first strand
Strand 2
A
504 505anti-parallel
Strand 3
A
511 513anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
635 639first strand
Strand 2
A
644 648anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
656 659first strand
Strand 2
A
664 667anti-parallel
Strand 3
A
670 674anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il