Analysis of interatomic Contacts of Structural Units in PDB entry:
5FMR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FMR entry

There are 3 chains in PDB entry 5FMR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 12VAL 270
B
 GLU 12VAL 270
C
 GLU 12ASP 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 5FMR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 39Right-handed alpha
Helix 2
2
A
48 52Right-handed 310
Helix 3
3
A
53 59Right-handed alpha
Helix 4
4
A
73 86Right-handed alpha
Helix 5
5
A
97 103Right-handed alpha
Helix 6
6
A
106 111Right-handed alpha
Helix 7
7
A
144 148Right-handed 310
Helix 8
8
A
228 232Right-handed 310
Helix 9
9
A
240 253Right-handed alpha
Helix 10
10
A
261 267Right-handed alpha
Helix 11
11
B
31 40Right-handed alpha
Helix 12
12
B
53 59Right-handed alpha
Helix 13
13
B
73 86Right-handed alpha
Helix 14
14
B
97 103Right-handed alpha
Helix 15
15
B
106 111Right-handed alpha
Helix 16
16
B
144 148Right-handed 310
Helix 17
17
B
228 232Right-handed 310
Helix 18
18
B
240 253Right-handed alpha
Helix 19
19
B
261 267Right-handed alpha
Helix 20
20
C
31 40Right-handed alpha
Helix 21
21
C
48 52Right-handed 310
Helix 22
22
C
53 59Right-handed alpha
Helix 23
23
C
73 86Right-handed alpha
Helix 24
24
C
97 103Right-handed alpha
Helix 25
25
C
106 112Right-handed alpha
Helix 26
26
C
144 148Right-handed 310
Helix 27
27
C
228 232Right-handed 310
Helix 28
28
C
240 253Right-handed alpha
Helix 29
29
C
261 267Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 5FMR. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 47first strand
Strand 2
A
14 18parallel
Strand 3
A
62 66parallel
Strand 4
A
89 93parallel
Strand 5
A
221 225parallel
Strand 6
A
209 215anti-parallel
Strand 7
A
194 198anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 117first strand
Strand 2
A
187 189anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
203 204anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 138first strand
Strand 2
A
179 182anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 47first strand
Strand 2
B
14 18parallel
Strand 3
B
62 66parallel
Strand 4
B
89 93parallel
Strand 5
B
221 225parallel
Strand 6
B
209 215anti-parallel
Strand 7
B
194 198anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 117first strand
Strand 2
B
187 189anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
203 204anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 138first strand
Strand 2
B
179 182anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 47first strand
Strand 2
C
14 18parallel
Strand 3
C
62 66parallel
Strand 4
C
89 93parallel
Strand 5
C
221 225parallel
Strand 6
C
209 215anti-parallel
Strand 7
C
194 198anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
115 117first strand
Strand 2
C
187 189anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
123 124first strand
Strand 2
C
203 204anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
135 138first strand
Strand 2
C
179 182anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il