Analysis of interatomic Contacts of Structural Units in PDB entry:
5FMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FMS entry

There are 3 chains in PDB entry 5FMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7LEU 248
B
 THR 8LEU 248
C
 ILE 9LEU 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5FMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 33Right-handed alpha
Helix 2
2
A
66 79Right-handed alpha
Helix 3
3
A
91 96Right-handed alpha
Helix 4
4
A
99 104Right-handed alpha
Helix 5
5
A
137 141Right-handed 310
Helix 6
6
A
216 220Right-handed 310
Helix 7
7
A
221 226Right-handed alpha
Helix 8
8
A
229 242Right-handed alpha
Helix 9
9
B
25 33Right-handed alpha
Helix 10
10
B
66 79Right-handed alpha
Helix 11
11
B
90 94Right-handed 310
Helix 12
12
B
99 104Right-handed alpha
Helix 13
13
B
137 141Right-handed 310
Helix 14
14
B
216 220Right-handed 310
Helix 15
15
B
221 226Right-handed alpha
Helix 16
16
B
229 242Right-handed alpha
Helix 17
17
C
25 30Right-handed alpha
Helix 18
18
C
66 79Right-handed alpha
Helix 19
19
C
90 94Right-handed 310
Helix 20
20
C
98 104Right-handed alpha
Helix 21
21
C
137 141Right-handed 310
Helix 22
22
C
216 221Right-handed 310
Helix 23
23
C
229 241Right-handed alpha
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There are 11 sheets in PDB entry 5FMS. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, CA, CB, CC, CD,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
9 12parallel
Strand 3
A
55 59parallel
Strand 4
A
82 86parallel
Strand 5
A
210 214parallel
Strand 6
A
196 201anti-parallel
Strand 7
A
181 185anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 110first strand
Strand 2
A
174 176anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
190 191anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 131first strand
Strand 2
A
166 169anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 41first strand
Strand 2
B
9 12parallel
Strand 3
B
55 59parallel
Strand 4
B
82 86parallel
Strand 5
B
210 214parallel
Strand 6
B
196 201anti-parallel
Strand 7
B
181 185anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 110first strand
Strand 2
B
174 176anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 131first strand
Strand 2
B
166 169anti-parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 11first strand
Strand 2
C
55 59parallel
Strand 3
C
82 86parallel
Strand 4
C
211 214parallel
Strand 5
C
196 201anti-parallel
Strand 6
C
181 185anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
108 110first strand
Strand 2
C
174 176anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 117first strand
Strand 2
C
190 191anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 131first strand
Strand 2
C
166 169anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il