Analysis of interatomic Contacts of Structural Units in PDB entry:
5FMV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FMV entry

There are 2 chains in PDB entry 5FMV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 224	LYS 574
B	CYS 226	GLY 572

There are 8 helices in PDB entry 5FMV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	225	230	Right-handed alpha
Helix 2	2	A	300	302	Right-handed 310
Helix 3	3	A	311	315	Right-handed 310
Helix 4	4	A	332	334	Right-handed 310
Helix 5	5	B	263	265	Right-handed 310
Helix 6	6	B	300	302	Right-handed 310
Helix 7	7	B	311	315	Right-handed 310
Helix 8	8	B	332	334	Right-handed 310

There are 18 sheets in PDB entry 5FMV. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, AH, AI, BC, BD, BE, BF, BG, BH, BI,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	240	first strand
Strand 2	A	245	250	anti-parallel
Strand 3	A	267	271	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	258	first strand
Strand 2	A	276	282	anti-parallel
Strand 3	A	291	296	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	308	first strand
Strand 2	A	319	325	anti-parallel
Strand 3	A	351	354	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	348	first strand
Strand 2	A	336	342	anti-parallel
Strand 3	A	362	371	anti-parallel
Strand 4	A	374	384	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	399	first strand
Strand 2	A	406	411	anti-parallel
Strand 3	A	441	444	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	468	first strand
Strand 2	A	452	462	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	477	first strand
Strand 2	A	452	462	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	468	first strand
Strand 2	B	452	462	parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	477	first strand
Strand 2	B	452	462	anti-parallel

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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	487	493	first strand
Strand 2	A	499	504	anti-parallel
Strand 3	A	536	539	anti-parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	532	first strand
Strand 2	A	516	522	anti-parallel
Strand 3	A	547	554	anti-parallel
Strand 4	A	564	569	anti-parallel

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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	240	first strand
Strand 2	B	245	250	anti-parallel
Strand 3	B	267	271	anti-parallel

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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	258	first strand
Strand 2	B	276	282	anti-parallel
Strand 3	B	291	296	anti-parallel

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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	308	first strand
Strand 2	B	319	325	anti-parallel
Strand 3	B	351	354	anti-parallel

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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	348	first strand
Strand 2	B	336	342	anti-parallel
Strand 3	B	362	371	anti-parallel
Strand 4	B	374	384	anti-parallel

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There are 3 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	399	first strand
Strand 2	B	406	411	anti-parallel
Strand 3	B	441	444	anti-parallel

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There are 3 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	487	493	first strand
Strand 2	B	499	504	anti-parallel
Strand 3	B	536	539	anti-parallel

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There are 4 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	526	532	first strand
Strand 2	B	516	522	anti-parallel
Strand 3	B	547	554	anti-parallel
Strand 4	B	564	569	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FMV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FMV