Analysis of interatomic Contacts of Structural Units in PDB entry:
5FN0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FN0 entry

There are 3 chains in PDB entry 5FN0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 6	LEU 460
B	ASN 6	LEU 460
C	ASN 6	GLY 389

There are 64 helices in PDB entry 5FN0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	17	28	Right-handed alpha
Helix 2	2	A	58	68	Right-handed alpha
Helix 3	3	A	70	76	Right-handed alpha
Helix 4	4	A	111	126	Right-handed alpha
Helix 5	5	A	170	180	Right-handed alpha
Helix 6	6	A	199	206	Right-handed alpha
Helix 7	7	A	258	270	Right-handed alpha
Helix 8	8	A	279	287	Right-handed alpha
Helix 9	9	A	310	313	Right-handed 310
Helix 10	10	A	317	321	Right-handed 310
Helix 11	11	A	322	341	Right-handed alpha
Helix 12	12	A	343	374	Right-handed alpha
Helix 13	13	A	379	396	Right-handed alpha
Helix 14	14	A	402	409	Right-handed alpha
Helix 15	15	A	413	433	Right-handed alpha
Helix 16	16	A	442	454	Right-handed alpha
Helix 17	17	B	17	28	Right-handed alpha
Helix 18	18	B	58	68	Right-handed alpha
Helix 19	19	B	70	76	Right-handed alpha
Helix 20	20	B	111	126	Right-handed alpha
Helix 21	21	B	170	180	Right-handed alpha
Helix 22	22	B	199	206	Right-handed alpha
Helix 23	23	B	258	270	Right-handed alpha
Helix 24	24	B	279	287	Right-handed alpha
Helix 25	25	B	310	313	Right-handed 310
Helix 26	26	B	317	321	Right-handed 310
Helix 27	27	B	322	341	Right-handed alpha
Helix 28	28	B	343	374	Right-handed alpha
Helix 29	29	B	379	396	Right-handed alpha
Helix 30	30	B	402	409	Right-handed alpha
Helix 31	31	B	413	433	Right-handed alpha
Helix 32	32	B	442	454	Right-handed alpha
Helix 33	33	C	17	28	Right-handed alpha
Helix 34	34	C	58	68	Right-handed alpha
Helix 35	35	C	70	76	Right-handed alpha
Helix 36	36	C	111	126	Right-handed alpha
Helix 37	37	C	170	180	Right-handed alpha
Helix 38	38	C	199	206	Right-handed alpha
Helix 39	39	C	258	270	Right-handed alpha
Helix 40	40	C	279	287	Right-handed alpha
Helix 41	41	C	310	313	Right-handed 310
Helix 42	42	C	317	321	Right-handed 310
Helix 43	43	C	322	341	Right-handed alpha
Helix 44	44	C	343	374	Right-handed alpha
Helix 45	45	C	379	396	Right-handed alpha
Helix 46	46	C	402	409	Right-handed alpha
Helix 47	47	C	413	433	Right-handed alpha
Helix 48	48	C	442	454	Right-handed alpha
Helix 49	49	D	17	28	Right-handed alpha
Helix 50	50	D	58	68	Right-handed alpha
Helix 51	51	D	70	76	Right-handed alpha
Helix 52	52	D	111	126	Right-handed alpha
Helix 53	53	D	170	180	Right-handed alpha
Helix 54	54	D	199	206	Right-handed alpha
Helix 55	55	D	258	270	Right-handed alpha
Helix 56	56	D	279	287	Right-handed alpha
Helix 57	57	D	310	313	Right-handed 310
Helix 58	58	D	317	321	Right-handed 310
Helix 59	59	D	322	341	Right-handed alpha
Helix 60	60	D	343	374	Right-handed alpha
Helix 61	61	D	379	396	Right-handed alpha
Helix 62	62	D	402	409	Right-handed alpha
Helix 63	63	D	413	433	Right-handed alpha
Helix 64	64	D	442	454	Right-handed alpha

There are 16 sheets in PDB entry 5FN0. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	32	37	parallel
Strand 3	A	9	13	parallel
Strand 4	A	162	164	parallel
Strand 5	A	306	308	parallel
Strand 6	A	301	302	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	57	first strand
Strand 2	A	106	110	anti-parallel
Strand 3	A	79	81	anti-parallel

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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	97	first strand
Strand 2	A	83	88	anti-parallel
Strand 3	A	213	218	parallel
Strand 4	A	221	227	anti-parallel
Strand 5	A	233	240	anti-parallel
Strand 6	A	184	198	anti-parallel
Strand 7	A	290	297	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	139	first strand
Strand 2	A	144	148	anti-parallel
Strand 3	A	154	158	anti-parallel

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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	32	36	parallel
Strand 3	B	9	13	parallel
Strand 4	B	162	164	parallel
Strand 5	B	306	308	parallel
Strand 6	B	301	302	anti-parallel

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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	106	110	anti-parallel
Strand 3	B	79	81	anti-parallel

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There are 7 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	97	first strand
Strand 2	B	83	88	anti-parallel
Strand 3	B	213	218	parallel
Strand 4	B	221	227	anti-parallel
Strand 5	B	233	240	anti-parallel
Strand 6	B	185	198	anti-parallel
Strand 7	B	290	296	anti-parallel

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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	139	first strand
Strand 2	B	144	148	anti-parallel
Strand 3	B	154	158	anti-parallel

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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	131	first strand
Strand 2	C	32	37	parallel
Strand 3	C	9	13	parallel
Strand 4	C	162	164	parallel
Strand 5	C	306	308	parallel
Strand 6	C	301	302	anti-parallel

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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	57	first strand
Strand 2	C	106	110	anti-parallel
Strand 3	C	79	81	anti-parallel

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There are 7 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	97	first strand
Strand 2	C	83	88	anti-parallel
Strand 3	C	213	218	parallel
Strand 4	C	221	227	anti-parallel
Strand 5	C	233	240	anti-parallel
Strand 6	C	185	198	anti-parallel
Strand 7	C	290	296	anti-parallel

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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	139	first strand
Strand 2	C	144	148	anti-parallel
Strand 3	C	154	158	anti-parallel

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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	130	first strand
Strand 2	D	32	36	parallel
Strand 3	D	9	13	parallel
Strand 4	D	162	164	parallel
Strand 5	D	306	308	parallel
Strand 6	D	301	302	anti-parallel

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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	57	first strand
Strand 2	D	106	110	anti-parallel
Strand 3	D	79	81	anti-parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	97	first strand
Strand 2	D	83	88	anti-parallel
Strand 3	D	213	218	parallel
Strand 4	D	221	227	anti-parallel
Strand 5	D	233	240	anti-parallel
Strand 6	D	185	198	anti-parallel
Strand 7	D	290	296	anti-parallel

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There are 3 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	139	first strand
Strand 2	D	144	148	anti-parallel
Strand 3	D	154	158	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FN0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FN0