Analysis of interatomic Contacts of Structural Units in PDB entry:
5FNV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FNV entry

There are 3 chains in PDB entry 5FNV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 437
B
 ARG 2ALA 428
C
 MET 1ARG 422
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 95 helices in PDB entry 5FNV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 29Right-handed alpha
Helix 2
2
A
47 51Right-handed 310
Helix 3
3
A
72 81Right-handed alpha
Helix 4
4
A
83 87Right-handed 310
Helix 5
5
A
88 90Right-handed 310
Helix 6
6
A
102 108Right-handed alpha
Helix 7
7
A
110 127Right-handed alpha
Helix 8
8
A
143 161Right-handed alpha
Helix 9
9
A
182 195Right-handed alpha
Helix 10
10
A
196 198Right-handed 310
Helix 11
11
A
206 218Right-handed alpha
Helix 12
12
A
223 244Right-handed alpha
Helix 13
13
A
287 295Right-handed alpha
Helix 14
14
A
296 300Right-handed 310
Helix 15
15
A
306 310Right-handed 310
Helix 16
16
A
324 337Right-handed alpha
Helix 17
17
A
384 401Right-handed alpha
Helix 18
18
A
404 410Right-handed alpha
Helix 19
19
A
414 437Right-handed alpha
Helix 20
20
B
10 28Right-handed alpha
Helix 21
21
B
40 44Right-handed 310
Helix 22
22
B
46 49Right-handed 310
Helix 23
23
B
70 79Right-handed alpha
Helix 24
24
B
81 85Right-handed 310
Helix 25
25
B
86 88Right-handed 310
Helix 26
26
B
100 106Right-handed alpha
Helix 27
27
B
107 126Right-handed alpha
Helix 28
28
B
142 159Right-handed alpha
Helix 29
29
B
172 176Right-handed 310
Helix 30
30
B
180 196Right-handed alpha
Helix 31
31
B
204 214Right-handed alpha
Helix 32
32
B
221 242Right-handed alpha
Helix 33
33
B
249 258Right-handed alpha
Helix 34
34
B
285 294Right-handed alpha
Helix 35
35
B
295 298Right-handed 310
Helix 36
36
B
304 308Right-handed 310
Helix 37
37
B
322 337Right-handed alpha
Helix 38
38
B
338 340Right-handed 310
Helix 39
39
B
374 390Right-handed alpha
Helix 40
40
B
395 400Right-handed alpha
Helix 41
41
B
404 428Right-handed alpha
Helix 42
42
C
10 29Right-handed alpha
Helix 43
43
C
47 51Right-handed 310
Helix 44
44
C
72 81Right-handed alpha
Helix 45
45
C
83 87Right-handed 310
Helix 46
46
C
88 90Right-handed 310
Helix 47
47
C
102 108Right-handed alpha
Helix 48
48
C
110 127Right-handed alpha
Helix 49
49
C
143 162Right-handed alpha
Helix 50
50
C
182 195Right-handed alpha
Helix 51
51
C
196 198Right-handed 310
Helix 52
52
C
206 218Right-handed alpha
Helix 53
53
C
223 245Right-handed alpha
Helix 54
54
C
255 260Right-handed alpha
Helix 55
55
C
277 282Right-handed alpha
Helix 56
56
C
287 295Right-handed alpha
Helix 57
57
C
296 300Right-handed 310
Helix 58
58
C
306 310Right-handed 310
Helix 59
59
C
324 337Right-handed alpha
Helix 60
60
C
384 401Right-handed alpha
Helix 61
61
C
404 410Right-handed alpha
Helix 62
62
C
414 437Right-handed alpha
Helix 63
63
D
10 28Right-handed alpha
Helix 64
64
D
40 44Right-handed 310
Helix 65
65
D
46 49Right-handed 310
Helix 66
66
D
70 79Right-handed alpha
Helix 67
67
D
81 85Right-handed 310
Helix 68
68
D
86 88Right-handed 310
Helix 69
69
D
100 106Right-handed alpha
Helix 70
70
D
107 126Right-handed alpha
Helix 71
71
D
142 159Right-handed alpha
Helix 72
72
D
180 196Right-handed alpha
Helix 73
73
D
204 214Right-handed alpha
Helix 74
74
D
221 242Right-handed alpha
Helix 75
75
D
249 258Right-handed alpha
Helix 76
76
D
285 294Right-handed alpha
Helix 77
77
D
295 298Right-handed 310
Helix 78
78
D
304 308Right-handed 310
Helix 79
79
D
322 337Right-handed alpha
Helix 80
80
D
338 340Right-handed 310
Helix 81
81
D
374 390Right-handed alpha
Helix 82
82
D
395 400Right-handed alpha
Helix 83
83
D
404 428Right-handed alpha
Helix 84
84
E
46 138Right-handed alpha
Helix 85
85
F
11 23Right-handed alpha
Helix 86
86
F
48 52Right-handed 310
Helix 87
87
F
67 71Right-handed 310
Helix 88
88
F
73 84Right-handed alpha
Helix 89
89
F
242 247Right-handed alpha
Helix 90
90
F
257 259Right-handed 310
Helix 91
91
F
264 276Right-handed alpha
Helix 92
92
F
278 283Right-handed alpha
Helix 93
93
F
283 303Right-handed alpha
Helix 94
94
F
339 341Right-handed 310
Helix 95
95
F
342 355Right-handed alpha
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There are 14 sheets in PDB entry 5FNV. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, CA, CB, CC, DA, DB, FA, FB, FC, FD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
4 9parallel
Strand 4
A
134 140parallel
Strand 5
A
165 172parallel
Strand 6
A
200 205parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
61 63anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 273first strand
Strand 2
A
373 381anti-parallel
Strand 3
A
312 321anti-parallel
Strand 4
A
349 356parallel
Strand 5
E
17 25anti-parallel
Strand 6
E
7 13anti-parallel
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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 92first strand
Strand 2
B
63 67parallel
Strand 3
B
4 9parallel
Strand 4
B
132 138parallel
Strand 5
B
163 170parallel
Strand 6
B
198 203parallel
Strand 7
B
265 271parallel
Strand 8
B
363 371anti-parallel
Strand 9
B
310 319anti-parallel
Strand 10
B
349 354parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
60 61anti-parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 94first strand
Strand 2
C
65 69parallel
Strand 3
C
4 9parallel
Strand 4
C
134 140parallel
Strand 5
C
165 172parallel
Strand 6
C
200 205parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 55first strand
Strand 2
C
61 63anti-parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
269 273first strand
Strand 2
C
373 381anti-parallel
Strand 3
C
312 321anti-parallel
Strand 4
C
351 356parallel
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There are 10 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
90 92first strand
Strand 2
D
63 67parallel
Strand 3
D
4 9parallel
Strand 4
D
132 138parallel
Strand 5
D
163 170parallel
Strand 6
D
198 203parallel
Strand 7
D
265 271parallel
Strand 8
D
363 371anti-parallel
Strand 9
D
310 319anti-parallel
Strand 10
D
349 354parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 54first strand
Strand 2
D
58 61anti-parallel
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There are 5 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
27 29first strand
Strand 2
F
2 6parallel
Strand 3
F
39 41parallel
Strand 4
F
61 62parallel
Strand 5
F
310 311parallel
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There are 4 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
97 99first strand
Strand 2
F
181 184anti-parallel
Strand 3
F
147 149anti-parallel
Strand 4
F
161 163anti-parallel
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There are 5 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
261 263first strand
Strand 2
F
220 223anti-parallel
Strand 3
F
199 207anti-parallel
Strand 4
F
213 216anti-parallel
Strand 5
F
375 378parallel
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There are 5 strands in FD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
261 263first strand
Strand 2
F
220 223anti-parallel
Strand 3
F
199 207anti-parallel
Strand 4
F
313 321anti-parallel
Strand 5
F
327 333anti-parallel
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