Analysis of interatomic Contacts of Structural Units in PDB entry:
5FO0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FO0 entry

There are 2 chains in PDB entry 5FO0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 338
B
 MET 1SER 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5FO0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 10Right-handed 310
Helix 2
2
A
28 46Right-handed alpha
Helix 3
3
A
57 63Right-handed alpha
Helix 4
4
A
73 84Right-handed alpha
Helix 5
5
A
102 111Right-handed alpha
Helix 6
6
A
129 133Right-handed 310
Helix 7
7
A
135 143Right-handed alpha
Helix 8
8
A
163 174Right-handed alpha
Helix 9
9
A
175 184Right-handed alpha
Helix 10
10
A
299 324Right-handed alpha
Helix 11
11
B
7 10Right-handed 310
Helix 12
12
B
28 46Right-handed alpha
Helix 13
13
B
57 63Right-handed alpha
Helix 14
14
B
73 84Right-handed alpha
Helix 15
15
B
102 111Right-handed alpha
Helix 16
16
B
129 133Right-handed 310
Helix 17
17
B
135 143Right-handed alpha
Helix 18
18
B
163 174Right-handed alpha
Helix 19
19
B
175 184Right-handed alpha
Helix 20
20
B
299 324Right-handed alpha
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There are 10 sheets in PDB entry 5FO0. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
88 92parallel
Strand 3
A
48 54parallel
Strand 4
A
17 21parallel
Strand 5
A
117 123parallel
Strand 6
A
148 152parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
160 161anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 192first strand
Strand 2
A
282 292anti-parallel
Strand 3
A
223 231anti-parallel
Strand 4
A
247 256anti-parallel
Strand 5
A
265 271anti-parallel
Strand 6
A
209 213anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 192first strand
Strand 2
A
282 292anti-parallel
Strand 3
A
223 231anti-parallel
Strand 4
A
247 256anti-parallel
Strand 5
A
332 333anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 240first strand
Strand 2
A
276 277anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
88 92parallel
Strand 3
B
48 54parallel
Strand 4
B
17 21parallel
Strand 5
B
117 123parallel
Strand 6
B
148 152parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 157first strand
Strand 2
B
160 162anti-parallel
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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 192first strand
Strand 2
B
282 292anti-parallel
Strand 3
B
223 231anti-parallel
Strand 4
B
247 255anti-parallel
Strand 5
B
265 271anti-parallel
Strand 6
B
209 213anti-parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 192first strand
Strand 2
B
282 292anti-parallel
Strand 3
B
223 231anti-parallel
Strand 4
B
247 255anti-parallel
Strand 5
B
332 333anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 240first strand
Strand 2
B
276 277anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il