Analysis of interatomic Contacts of Structural Units in PDB entry:
5FO4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FO4 entry

There are 2 chains in PDB entry 5FO4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 273GLU 687
B
 SER 273GLU 687
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5FO4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
285 304Right-handed alpha
Helix 2
2
A
367 369Right-handed 310
Helix 3
3
A
370 378Right-handed alpha
Helix 4
4
A
379 385Right-handed alpha
Helix 5
5
A
397 404Right-handed 310
Helix 6
6
A
439 447Right-handed alpha
Helix 7
7
A
454 456Right-handed 310
Helix 8
8
A
457 464Right-handed alpha
Helix 9
9
A
534 537Right-handed 310
Helix 10
10
A
575 588Right-handed alpha
Helix 11
11
A
588 596Right-handed alpha
Helix 12
12
A
599 604Right-handed 310
Helix 13
13
A
619 628Right-handed alpha
Helix 14
14
A
637 653Right-handed alpha
Helix 15
15
A
664 679Right-handed alpha
Helix 16
16
B
285 304Right-handed alpha
Helix 17
17
B
367 369Right-handed 310
Helix 18
18
B
370 378Right-handed alpha
Helix 19
19
B
379 385Right-handed alpha
Helix 20
20
B
397 404Right-handed 310
Helix 21
21
B
424 429Right-handed 310
Helix 22
22
B
439 447Right-handed alpha
Helix 23
23
B
456 464Right-handed alpha
Helix 24
24
B
534 537Right-handed 310
Helix 25
25
B
575 588Right-handed alpha
Helix 26
26
B
588 596Right-handed alpha
Helix 27
27
B
599 604Right-handed 310
Helix 28
28
B
619 628Right-handed alpha
Helix 29
29
B
637 653Right-handed alpha
Helix 30
30
B
664 679Right-handed alpha
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There are 8 sheets in PDB entry 5FO4. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 532first strand
Strand 2
A
414 420anti-parallel
Strand 3
A
449 453anti-parallel
Strand 4
A
388 395parallel
Strand 5
A
275 283anti-parallel
Strand 6
A
540 542anti-parallel
Strand 7
A
551 555anti-parallel
Strand 8
A
406 409parallel
Strand 9
A
567 570anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 532first strand
Strand 2
A
414 420anti-parallel
Strand 3
A
449 453anti-parallel
Strand 4
A
388 395parallel
Strand 5
A
275 283anti-parallel
Strand 6
A
682 686anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 438first strand
Strand 2
A
469 470parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
611 612first strand
Strand 2
A
654 655anti-parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
529 532first strand
Strand 2
B
414 420anti-parallel
Strand 3
B
449 453anti-parallel
Strand 4
B
388 395parallel
Strand 5
B
275 283anti-parallel
Strand 6
B
540 542anti-parallel
Strand 7
B
551 555parallel
Strand 8
B
406 409parallel
Strand 9
B
567 570parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
529 532first strand
Strand 2
B
414 420anti-parallel
Strand 3
B
449 453anti-parallel
Strand 4
B
388 395parallel
Strand 5
B
275 283anti-parallel
Strand 6
B
682 686anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
437 438first strand
Strand 2
B
469 470parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
611 612first strand
Strand 2
B
654 655anti-parallel
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