Analysis of interatomic Contacts of Structural Units in PDB entry:
5FO7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FO7 entry

There are 2 chains in PDB entry 5FO7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 23	PRO 665
B	ASP 752	LEU 1403

There are 33 helices in PDB entry 5FO7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	77	81	Right-handed 310
Helix 2	2	A	303	311	Right-handed alpha
Helix 3	3	A	315	320	Right-handed 310
Helix 4	4	A	448	452	Right-handed 310
Helix 5	5	A	522	526	Right-handed 310
Helix 6	6	A	600	606	Right-handed alpha
Helix 7	7	A	612	623	Right-handed alpha
Helix 8	8	A	634	642	Right-handed alpha
Helix 9	9	B	757	761	Right-handed 310
Helix 10	10	B	948	953	Right-handed alpha
Helix 11	11	B	996	1004	Right-handed 310
Helix 12	12	B	1012	1032	Right-handed alpha
Helix 13	13	B	1033	1038	Right-handed alpha
Helix 14	14	B	1040	1057	Right-handed alpha
Helix 15	15	B	1075	1089	Right-handed alpha
Helix 16	16	B	1096	1110	Right-handed alpha
Helix 17	17	B	1130	1135	Right-handed 310
Helix 18	18	B	1138	1154	Right-handed alpha
Helix 19	19	B	1164	1179	Right-handed alpha
Helix 20	20	B	1185	1198	Right-handed alpha
Helix 21	21	B	1203	1213	Right-handed alpha
Helix 22	22	B	1216	1218	Right-handed 310
Helix 23	23	B	1225	1241	Right-handed alpha
Helix 24	24	B	1248	1259	Right-handed alpha
Helix 25	25	B	1268	1285	Right-handed alpha
Helix 26	26	B	1414	1423	Right-handed alpha
Helix 27	27	B	1430	1436	Right-handed alpha
Helix 28	28	B	1528	1536	Right-handed alpha
Helix 29	29	B	1590	1595	Right-handed alpha
Helix 30	30	B	1607	1609	Right-handed 310
Helix 31	31	B	1614	1618	Right-handed 310
Helix 32	32	B	1633	1638	Right-handed alpha
Helix 33	33	B	1642	1659	Right-handed alpha

There are 24 sheets in PDB entry 5FO7. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	89	first strand
Strand 2	A	39	47	anti-parallel
Strand 3	A	25	31	anti-parallel
Strand 4	A	644	648	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	35	first strand
Strand 2	A	115	124	parallel
Strand 3	A	104	112	anti-parallel
Strand 4	A	53	61	anti-parallel
Strand 5	A	68	76	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	134	first strand
Strand 2	A	144	152	anti-parallel
Strand 3	A	188	194	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	139	first strand
Strand 2	A	218	224	parallel
Strand 3	A	202	210	anti-parallel
Strand 4	A	162	168	anti-parallel
Strand 5	A	174	181	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	238	first strand
Strand 2	A	251	259	anti-parallel
Strand 3	A	297	302	anti-parallel

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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	244	first strand
Strand 2	A	338	349	parallel
Strand 3	A	323	332	anti-parallel
Strand 4	A	267	277	anti-parallel
Strand 5	A	280	293	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	356	first strand
Strand 2	A	369	377	anti-parallel
Strand 3	A	406	412	anti-parallel

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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	A	438	445	parallel
Strand 3	A	420	426	anti-parallel
Strand 4	A	388	391	anti-parallel
Strand 5	A	394	400	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	460	first strand
Strand 2	A	469	478	anti-parallel
Strand 3	A	514	521	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	507	first strand
Strand 2	A	489	496	anti-parallel
Strand 3	A	528	539	anti-parallel
Strand 4	A	543	554	anti-parallel

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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	567	first strand
Strand 2	A	580	588	anti-parallel
Strand 3	B	786	794	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	770	771	first strand
Strand 2	A	592	599	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	775	777	first strand
Strand 2	A	592	599	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	814	817	first strand
Strand 2	B	801	810	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	821	824	first strand
Strand 2	B	801	810	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	829	834	first strand
Strand 2	B	845	853	anti-parallel
Strand 3	B	892	902	anti-parallel
Strand 4	B	872	873	anti-parallel

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There are 5 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	838	840	first strand
Strand 2	B	922	932	parallel
Strand 3	B	906	916	anti-parallel
Strand 4	B	860	866	anti-parallel
Strand 5	B	882	888	anti-parallel

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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	936	947	first strand
Strand 2	B	1339	1350	anti-parallel
Strand 3	B	977	985	anti-parallel
Strand 4	B	1320	1324	anti-parallel

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There are 4 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	957	962	first strand
Strand 2	B	1330	1335	anti-parallel
Strand 3	B	1293	1299	anti-parallel
Strand 4	B	1308	1312	anti-parallel

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There are 2 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1060	1061	first strand
Strand 2	B	1065	1066	anti-parallel

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There are 4 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1361	1369	first strand
Strand 2	B	1383	1392	anti-parallel
Strand 3	B	1457	1465	anti-parallel
Strand 4	B	1411	1413	anti-parallel

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There are 5 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1427	1428	first strand
Strand 2	B	1443	1448	anti-parallel
Strand 3	B	1401	1406	anti-parallel
Strand 4	B	1475	1481	anti-parallel
Strand 5	B	1484	1493	anti-parallel

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There are 2 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1504	1507	first strand
Strand 2	B	1510	1513	anti-parallel

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There are 7 strands in BM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1611	1612	first strand
Strand 2	B	1619	1621	anti-parallel
Strand 3	B	1581	1587	parallel
Strand 4	B	1558	1570	anti-parallel
Strand 5	B	1543	1553	anti-parallel
Strand 6	B	1601	1606	anti-parallel
Strand 7	B	1627	1631	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FO7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FO7