Analysis of interatomic Contacts of Structural Units in PDB entry:
5FO8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FO8 entry

There are 2 chains in PDB entry 5FO8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 23	PRO 665
B	GLU 753	ASP 1395

There are 39 helices in PDB entry 5FO8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	77	81	Right-handed 310
Helix 2	2	A	303	310	Right-handed alpha
Helix 3	3	A	315	320	Right-handed 310
Helix 4	4	A	432	436	Right-handed 310
Helix 5	5	A	448	452	Right-handed 310
Helix 6	6	A	483	487	Right-handed 310
Helix 7	7	A	522	526	Right-handed 310
Helix 8	8	A	600	606	Right-handed alpha
Helix 9	9	A	612	623	Right-handed alpha
Helix 10	10	A	634	642	Right-handed alpha
Helix 11	11	B	757	761	Right-handed 310
Helix 12	12	B	948	953	Right-handed alpha
Helix 13	13	B	996	1004	Right-handed 310
Helix 14	14	B	1012	1032	Right-handed alpha
Helix 15	15	B	1033	1038	Right-handed alpha
Helix 16	16	B	1041	1057	Right-handed alpha
Helix 17	17	B	1075	1090	Right-handed alpha
Helix 18	18	B	1096	1112	Right-handed alpha
Helix 19	19	B	1126	1134	Right-handed 310
Helix 20	20	B	1138	1155	Right-handed alpha
Helix 21	21	B	1164	1180	Right-handed alpha
Helix 22	22	B	1181	1183	Right-handed 310
Helix 23	23	B	1185	1198	Right-handed alpha
Helix 24	24	B	1203	1213	Right-handed alpha
Helix 25	25	B	1216	1218	Right-handed 310
Helix 26	26	B	1225	1243	Right-handed alpha
Helix 27	27	B	1248	1259	Right-handed alpha
Helix 28	28	B	1268	1286	Right-handed alpha
Helix 29	29	B	1414	1423	Right-handed alpha
Helix 30	30	B	1431	1435	Right-handed 310
Helix 31	31	B	1439	1441	Right-handed 310
Helix 32	32	B	1509	1516	Right-handed alpha
Helix 33	33	B	1517	1519	Right-handed 310
Helix 34	34	B	1528	1537	Right-handed alpha
Helix 35	35	B	1590	1595	Right-handed alpha
Helix 36	36	B	1633	1638	Right-handed alpha
Helix 37	37	B	1639	1641	Right-handed 310
Helix 38	38	B	1642	1659	Right-handed alpha
Helix 39	39	C	211	215	Right-handed 310

There are 26 sheets in PDB entry 5FO8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, CA, CB, CC, CD,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	88	first strand
Strand 2	A	40	47	anti-parallel
Strand 3	A	25	31	anti-parallel
Strand 4	A	644	648	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	35	first strand
Strand 2	A	115	124	parallel
Strand 3	A	104	112	anti-parallel
Strand 4	A	53	61	anti-parallel
Strand 5	A	68	76	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	134	first strand
Strand 2	A	144	152	anti-parallel
Strand 3	A	188	194	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	139	first strand
Strand 2	A	218	224	parallel
Strand 3	A	202	210	anti-parallel
Strand 4	A	162	168	anti-parallel
Strand 5	A	174	181	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	238	first strand
Strand 2	A	251	259	anti-parallel
Strand 3	A	297	302	anti-parallel

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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	244	first strand
Strand 2	A	338	349	parallel
Strand 3	A	323	332	anti-parallel
Strand 4	A	267	277	anti-parallel
Strand 5	A	280	293	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	356	first strand
Strand 2	A	369	377	anti-parallel
Strand 3	A	406	412	anti-parallel

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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	A	438	445	parallel
Strand 3	A	420	426	anti-parallel
Strand 4	A	388	391	anti-parallel
Strand 5	A	398	400	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	459	first strand
Strand 2	A	470	478	anti-parallel
Strand 3	A	514	520	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	507	first strand
Strand 2	A	489	496	anti-parallel
Strand 3	A	528	537	anti-parallel
Strand 4	A	545	554	anti-parallel

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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	567	first strand
Strand 2	A	580	588	anti-parallel
Strand 3	B	786	794	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	770	771	first strand
Strand 2	A	592	599	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	775	777	first strand
Strand 2	A	592	599	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	814	817	first strand
Strand 2	B	801	810	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	821	824	first strand
Strand 2	B	801	810	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	829	834	first strand
Strand 2	B	845	853	anti-parallel
Strand 3	B	892	902	anti-parallel
Strand 4	B	872	873	anti-parallel

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There are 5 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	839	840	first strand
Strand 2	B	922	932	parallel
Strand 3	B	906	916	anti-parallel
Strand 4	B	860	866	anti-parallel
Strand 5	B	883	888	anti-parallel

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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	936	947	first strand
Strand 2	B	1340	1350	anti-parallel
Strand 3	B	977	984	anti-parallel
Strand 4	B	1320	1324	anti-parallel

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There are 4 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	957	962	first strand
Strand 2	B	1330	1337	anti-parallel
Strand 3	B	1293	1299	anti-parallel
Strand 4	B	1307	1312	anti-parallel

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There are 4 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1361	1369	first strand
Strand 2	B	1383	1392	anti-parallel
Strand 3	B	1457	1465	anti-parallel
Strand 4	B	1411	1413	anti-parallel

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There are 5 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1427	1428	first strand
Strand 2	B	1443	1448	anti-parallel
Strand 3	B	1401	1406	anti-parallel
Strand 4	B	1475	1481	anti-parallel
Strand 5	B	1484	1493	anti-parallel

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There are 7 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1611	1612	first strand
Strand 2	B	1619	1621	anti-parallel
Strand 3	B	1581	1587	parallel
Strand 4	B	1558	1570	anti-parallel
Strand 5	B	1541	1554	anti-parallel
Strand 6	B	1601	1607	anti-parallel
Strand 7	B	1627	1631	anti-parallel

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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	173	first strand
Strand 2	C	186	191	anti-parallel
Strand 3	C	207	209	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	203	first strand
Strand 2	C	222	224	anti-parallel

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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	240	first strand
Strand 2	C	251	256	anti-parallel
Strand 3	C	267	270	anti-parallel
Strand 4	C	276	277	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	260	263	first strand
Strand 2	C	282	285	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FO8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FO8