Analysis of interatomic Contacts of Structural Units in PDB entry:
5FOF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FOF entry

There are 4 chains in PDB entry 5FOF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 258	GLU 567
B	LEU 258	GLU 567
C	LEU 258	GLU 567
D	LEU 258	GLU 567

There are 49 helices in PDB entry 5FOF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	266	268	Right-handed 310
Helix 2	2	A	279	293	Right-handed alpha
Helix 3	3	A	305	312	Right-handed alpha
Helix 4	4	A	322	329	Right-handed 310
Helix 5	5	A	364	372	Right-handed alpha
Helix 6	6	A	381	389	Right-handed alpha
Helix 7	7	A	413	417	Right-handed alpha
Helix 8	8	A	455	468	Right-handed alpha
Helix 9	9	A	468	476	Right-handed alpha
Helix 10	10	A	479	484	Right-handed 310
Helix 11	11	A	499	508	Right-handed alpha
Helix 12	12	A	517	533	Right-handed alpha
Helix 13	13	A	544	559	Right-handed alpha
Helix 14	14	B	279	290	Right-handed alpha
Helix 15	15	B	305	311	Right-handed alpha
Helix 16	16	B	322	329	Right-handed 310
Helix 17	17	B	364	372	Right-handed alpha
Helix 18	18	B	382	389	Right-handed alpha
Helix 19	19	B	413	417	Right-handed alpha
Helix 20	20	B	455	468	Right-handed alpha
Helix 21	21	B	468	476	Right-handed alpha
Helix 22	22	B	479	483	Right-handed 310
Helix 23	23	B	499	508	Right-handed alpha
Helix 24	24	B	517	533	Right-handed alpha
Helix 25	25	B	544	559	Right-handed alpha
Helix 26	26	C	279	290	Right-handed alpha
Helix 27	27	C	305	312	Right-handed alpha
Helix 28	28	C	322	329	Right-handed 310
Helix 29	29	C	364	372	Right-handed alpha
Helix 30	30	C	382	389	Right-handed alpha
Helix 31	31	C	413	417	Right-handed alpha
Helix 32	32	C	455	468	Right-handed alpha
Helix 33	33	C	468	476	Right-handed alpha
Helix 34	34	C	481	485	Right-handed 310
Helix 35	35	C	499	508	Right-handed alpha
Helix 36	36	C	517	533	Right-handed alpha
Helix 37	37	C	544	559	Right-handed alpha
Helix 38	38	D	279	292	Right-handed alpha
Helix 39	39	D	305	312	Right-handed alpha
Helix 40	40	D	322	326	Right-handed 310
Helix 41	41	D	364	372	Right-handed alpha
Helix 42	42	D	382	389	Right-handed alpha
Helix 43	43	D	413	417	Right-handed alpha
Helix 44	44	D	455	468	Right-handed alpha
Helix 45	45	D	468	476	Right-handed alpha
Helix 46	46	D	479	483	Right-handed 310
Helix 47	47	D	499	508	Right-handed alpha
Helix 48	48	D	517	533	Right-handed alpha
Helix 49	49	D	544	559	Right-handed alpha

There are 18 sheets in PDB entry 5FOF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD, DE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	260	first strand
Strand 2	A	263	264	anti-parallel

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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	412	first strand
Strand 2	A	339	345	anti-parallel
Strand 3	A	374	378	anti-parallel
Strand 4	A	313	320	parallel
Strand 5	A	270	277	anti-parallel
Strand 6	A	420	422	anti-parallel
Strand 7	A	431	435	anti-parallel
Strand 8	A	331	334	parallel
Strand 9	A	448	450	anti-parallel

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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	412	first strand
Strand 2	A	339	345	anti-parallel
Strand 3	A	374	378	anti-parallel
Strand 4	A	313	320	parallel
Strand 5	A	270	277	anti-parallel
Strand 6	A	562	565	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	363	first strand
Strand 2	A	394	395	parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	491	492	first strand
Strand 2	A	534	535	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	260	first strand
Strand 2	B	263	264	anti-parallel

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There are 9 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	412	first strand
Strand 2	B	339	345	anti-parallel
Strand 3	B	374	379	anti-parallel
Strand 4	B	313	320	parallel
Strand 5	B	270	277	anti-parallel
Strand 6	B	420	422	anti-parallel
Strand 7	B	431	435	anti-parallel
Strand 8	B	331	334	parallel
Strand 9	B	448	450	anti-parallel

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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	412	first strand
Strand 2	B	339	345	anti-parallel
Strand 3	B	374	379	anti-parallel
Strand 4	B	313	320	parallel
Strand 5	B	270	277	anti-parallel
Strand 6	B	562	565	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	491	492	first strand
Strand 2	B	534	535	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	260	first strand
Strand 2	C	263	264	anti-parallel

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There are 9 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	412	first strand
Strand 2	C	339	345	anti-parallel
Strand 3	C	374	378	anti-parallel
Strand 4	C	313	320	parallel
Strand 5	C	270	277	anti-parallel
Strand 6	C	420	422	anti-parallel
Strand 7	C	431	435	anti-parallel
Strand 8	C	331	334	parallel
Strand 9	C	447	450	anti-parallel

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There are 6 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	412	first strand
Strand 2	C	339	345	anti-parallel
Strand 3	C	374	378	anti-parallel
Strand 4	C	313	320	parallel
Strand 5	C	270	277	anti-parallel
Strand 6	C	562	565	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	491	492	first strand
Strand 2	C	534	535	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	260	first strand
Strand 2	D	263	264	anti-parallel

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There are 9 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	412	first strand
Strand 2	D	339	345	anti-parallel
Strand 3	D	374	378	anti-parallel
Strand 4	D	313	320	parallel
Strand 5	D	270	277	anti-parallel
Strand 6	D	420	423	anti-parallel
Strand 7	D	431	435	anti-parallel
Strand 8	D	331	334	parallel
Strand 9	D	447	450	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	412	first strand
Strand 2	D	339	345	anti-parallel
Strand 3	D	374	378	anti-parallel
Strand 4	D	313	320	parallel
Strand 5	D	270	277	anti-parallel
Strand 6	D	562	565	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	362	363	first strand
Strand 2	D	394	395	parallel

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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	491	492	first strand
Strand 2	D	534	535	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FOF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FOF