Analysis of interatomic Contacts of Structural Units in PDB entry:
5FOG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FOG entry

There are 4 chains in PDB entry 5FOG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 254	GLU 541
B	GLY 254	GLU 541
C	GLY 254	GLU 541
D	GLY 254	GLU 541

There are 48 helices in PDB entry 5FOG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	269	271	Right-handed 310
Helix 2	2	A	272	277	Right-handed alpha
Helix 3	3	A	289	296	Right-handed 310
Helix 4	4	A	320	324	Right-handed 310
Helix 5	5	A	334	339	Right-handed alpha
Helix 6	6	A	349	358	Right-handed alpha
Helix 7	7	A	389	392	Right-handed 310
Helix 8	8	A	430	443	Right-handed alpha
Helix 9	9	A	443	450	Right-handed alpha
Helix 10	10	A	453	457	Right-handed 310
Helix 11	11	A	472	481	Right-handed alpha
Helix 12	12	A	488	507	Right-handed alpha
Helix 13	13	A	518	533	Right-handed alpha
Helix 14	14	B	269	271	Right-handed 310
Helix 15	15	B	272	277	Right-handed alpha
Helix 16	16	B	289	296	Right-handed 310
Helix 17	17	B	334	339	Right-handed 310
Helix 18	18	B	349	358	Right-handed alpha
Helix 19	19	B	389	392	Right-handed 310
Helix 20	20	B	430	443	Right-handed alpha
Helix 21	21	B	443	450	Right-handed alpha
Helix 22	22	B	453	457	Right-handed 310
Helix 23	23	B	472	482	Right-handed alpha
Helix 24	24	B	488	507	Right-handed alpha
Helix 25	25	B	518	533	Right-handed alpha
Helix 26	26	C	269	271	Right-handed 310
Helix 27	27	C	272	277	Right-handed alpha
Helix 28	28	C	289	296	Right-handed 310
Helix 29	29	C	334	341	Right-handed 310
Helix 30	30	C	349	358	Right-handed alpha
Helix 31	31	C	389	392	Right-handed 310
Helix 32	32	C	430	443	Right-handed alpha
Helix 33	33	C	443	450	Right-handed alpha
Helix 34	34	C	453	457	Right-handed 310
Helix 35	35	C	472	481	Right-handed alpha
Helix 36	36	C	488	507	Right-handed alpha
Helix 37	37	C	518	533	Right-handed alpha
Helix 38	38	D	269	273	Right-handed 310
Helix 39	39	D	289	296	Right-handed 310
Helix 40	40	D	334	339	Right-handed alpha
Helix 41	41	D	349	358	Right-handed alpha
Helix 42	42	D	389	392	Right-handed 310
Helix 43	43	D	430	443	Right-handed alpha
Helix 44	44	D	443	450	Right-handed alpha
Helix 45	45	D	453	457	Right-handed 310
Helix 46	46	D	472	481	Right-handed alpha
Helix 47	47	D	488	507	Right-handed alpha
Helix 48	48	D	518	533	Right-handed alpha

There are 16 sheets in PDB entry 5FOG. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	387	first strand
Strand 2	A	306	312	anti-parallel
Strand 3	A	344	348	anti-parallel
Strand 4	A	280	287	parallel
Strand 5	A	257	265	anti-parallel
Strand 6	A	395	397	anti-parallel
Strand 7	A	405	410	anti-parallel
Strand 8	A	298	301	parallel
Strand 9	A	422	425	anti-parallel

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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	387	first strand
Strand 2	A	306	312	anti-parallel
Strand 3	A	344	348	anti-parallel
Strand 4	A	280	287	parallel
Strand 5	A	257	265	anti-parallel
Strand 6	A	536	540	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	332	first strand
Strand 2	A	364	365	parallel
Strand 3	A	379	380	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	465	first strand
Strand 2	A	508	509	anti-parallel

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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	382	387	first strand
Strand 2	B	306	312	anti-parallel
Strand 3	B	344	348	anti-parallel
Strand 4	B	280	287	parallel
Strand 5	B	257	265	anti-parallel
Strand 6	B	395	397	anti-parallel
Strand 7	B	405	410	anti-parallel
Strand 8	B	298	301	parallel
Strand 9	B	422	425	anti-parallel

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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	382	387	first strand
Strand 2	B	306	312	anti-parallel
Strand 3	B	344	348	anti-parallel
Strand 4	B	280	287	parallel
Strand 5	B	257	265	anti-parallel
Strand 6	B	536	540	anti-parallel

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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	332	first strand
Strand 2	B	364	368	parallel
Strand 3	B	376	380	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	465	first strand
Strand 2	B	508	509	anti-parallel

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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	382	387	first strand
Strand 2	C	306	312	anti-parallel
Strand 3	C	344	348	anti-parallel
Strand 4	C	280	287	parallel
Strand 5	C	257	265	anti-parallel
Strand 6	C	395	397	anti-parallel
Strand 7	C	406	410	anti-parallel
Strand 8	C	298	301	parallel
Strand 9	C	422	425	anti-parallel

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There are 6 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	382	387	first strand
Strand 2	C	306	312	anti-parallel
Strand 3	C	344	348	anti-parallel
Strand 4	C	280	287	parallel
Strand 5	C	257	265	anti-parallel
Strand 6	C	536	540	anti-parallel

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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	332	first strand
Strand 2	C	364	365	parallel
Strand 3	C	379	380	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	464	465	first strand
Strand 2	C	508	509	anti-parallel

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There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	382	387	first strand
Strand 2	D	306	312	anti-parallel
Strand 3	D	344	348	anti-parallel
Strand 4	D	280	287	parallel
Strand 5	D	257	265	anti-parallel
Strand 6	D	395	397	anti-parallel
Strand 7	D	406	410	anti-parallel
Strand 8	D	298	301	parallel
Strand 9	D	422	425	anti-parallel

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There are 6 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	382	387	first strand
Strand 2	D	306	312	anti-parallel
Strand 3	D	344	348	anti-parallel
Strand 4	D	280	287	parallel
Strand 5	D	257	265	anti-parallel
Strand 6	D	536	540	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	331	332	first strand
Strand 2	D	364	365	parallel
Strand 3	D	379	380	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	464	465	first strand
Strand 2	D	508	509	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FOG

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FOG