Analysis of interatomic Contacts of Structural Units in PDB entry:
5FOI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FOI entry

There are 2 chains in PDB entry 5FOI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0TRP 388
B
 MET 1TRP 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 5FOI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 22Right-handed alpha
Helix 2
2
A
43 52Right-handed alpha
Helix 3
3
A
59 63Right-handed 310
Helix 4
4
A
78 82Right-handed 310
Helix 5
5
A
85 95Right-handed alpha
Helix 6
6
A
96 98Right-handed 310
Helix 7
7
A
99 104Right-handed alpha
Helix 8
8
A
106 123Right-handed alpha
Helix 9
9
A
130 148Right-handed alpha
Helix 10
10
A
150 152Right-handed 310
Helix 11
11
A
153 165Right-handed alpha
Helix 12
12
A
171 193Right-handed alpha
Helix 13
13
A
197 206Right-handed alpha
Helix 14
14
A
213 246Right-handed alpha
Helix 15
15
A
246 256Right-handed alpha
Helix 16
16
A
259 272Right-handed alpha
Helix 17
17
A
301 307Right-handed alpha
Helix 18
18
A
339 358Right-handed alpha
Helix 19
19
B
16 24Right-handed alpha
Helix 20
20
B
43 52Right-handed alpha
Helix 21
21
B
59 63Right-handed 310
Helix 22
22
B
78 82Right-handed 310
Helix 23
23
B
85 95Right-handed alpha
Helix 24
24
B
96 98Right-handed 310
Helix 25
25
B
99 106Right-handed alpha
Helix 26
26
B
106 123Right-handed alpha
Helix 27
27
B
130 148Right-handed alpha
Helix 28
28
B
150 152Right-handed 310
Helix 29
29
B
153 165Right-handed alpha
Helix 30
30
B
171 193Right-handed alpha
Helix 31
31
B
197 206Right-handed alpha
Helix 32
32
B
213 246Right-handed alpha
Helix 33
33
B
246 256Right-handed alpha
Helix 34
34
B
259 272Right-handed alpha
Helix 35
35
B
301 307Right-handed alpha
Helix 36
36
B
339 358Right-handed alpha
Helix 37
37
B
366 370Right-handed 310
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There are 6 sheets in PDB entry 5FOI. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
28 31parallel
Strand 3
A
38 41anti-parallel
Strand 4
A
297 300parallel
Strand 5
A
277 281anti-parallel
Strand 6
A
56 57anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
385 387anti-parallel
Strand 3
A
362 363anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 287first strand
Strand 2
A
290 292anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
28 31parallel
Strand 3
B
38 41anti-parallel
Strand 4
B
297 300parallel
Strand 5
B
277 281anti-parallel
Strand 6
B
56 57anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 129first strand
Strand 2
B
385 387anti-parallel
Strand 3
B
362 363anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
285 287first strand
Strand 2
B
290 292anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il