Analysis of interatomic Contacts of Structural Units in PDB entry:
5FOL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FOL entry

There is 1 chain in PDB entry 5FOL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 254GLU 541
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5FOL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
269 277Right-handed alpha
Helix 2
2
A
289 296Right-handed 310
Helix 3
3
A
334 342Right-handed alpha
Helix 4
4
A
349 359Right-handed alpha
Helix 5
5
A
388 392Right-handed alpha
Helix 6
6
A
430 443Right-handed alpha
Helix 7
7
A
443 450Right-handed alpha
Helix 8
8
A
453 457Right-handed 310
Helix 9
9
A
472 481Right-handed alpha
Helix 10
10
A
488 507Right-handed alpha
Helix 11
11
A
518 533Right-handed alpha
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There are 4 sheets in PDB entry 5FOL. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 387first strand
Strand 2
A
306 312anti-parallel
Strand 3
A
344 348anti-parallel
Strand 4
A
280 287parallel
Strand 5
A
257 265anti-parallel
Strand 6
A
395 397anti-parallel
Strand 7
A
406 410anti-parallel
Strand 8
A
298 301parallel
Strand 9
A
422 425anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 387first strand
Strand 2
A
306 312anti-parallel
Strand 3
A
344 348anti-parallel
Strand 4
A
280 287parallel
Strand 5
A
257 265anti-parallel
Strand 6
A
536 540anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 366first strand
Strand 2
A
378 380anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 465first strand
Strand 2
A
508 509anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il