Analysis of interatomic Contacts of Structural Units in PDB entry:
5FOO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FOO entry

There are 6 chains in PDB entry 5FOO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 463
B
 MET 1ILE 463
C
 MET 1ILE 463
D
 MET 1ILE 463
E
 MET 1ILE 463
F
 MET 1LEU 462
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are128 helices in PDB entry 5FOO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 20Right-handed alpha
Helix 2
2
A
29 38Right-handed alpha
Helix 3
3
A
39 46Right-handed 310
Helix 4
4
A
53 68Right-handed alpha
Helix 5
5
A
78 83Right-handed alpha
Helix 6
6
A
92 109Right-handed alpha
Helix 7
7
A
123 131Right-handed alpha
Helix 8
8
A
132 134Right-handed 310
Helix 9
9
A
135 154Right-handed alpha
Helix 10
10
A
165 175Right-handed alpha
Helix 11
11
A
185 209Right-handed alpha
Helix 12
12
A
234 249Right-handed alpha
Helix 13
13
A
249 259Right-handed alpha
Helix 14
14
A
262 272Right-handed alpha
Helix 15
15
A
279 289Right-handed alpha
Helix 16
16
A
318 322Right-handed 310
Helix 17
17
A
343 357Right-handed alpha
Helix 18
18
A
373 377Right-handed 310
Helix 19
19
A
386 406Right-handed alpha
Helix 20
20
A
423 427Right-handed 310
Helix 21
21
A
447 460Right-handed alpha
Helix 22
22
B
15 20Right-handed alpha
Helix 23
23
B
29 38Right-handed alpha
Helix 24
24
B
39 46Right-handed 310
Helix 25
25
B
53 68Right-handed alpha
Helix 26
26
B
78 83Right-handed alpha
Helix 27
27
B
92 109Right-handed alpha
Helix 28
28
B
123 131Right-handed alpha
Helix 29
29
B
132 134Right-handed 310
Helix 30
30
B
135 154Right-handed alpha
Helix 31
31
B
165 175Right-handed alpha
Helix 32
32
B
185 209Right-handed alpha
Helix 33
33
B
234 249Right-handed alpha
Helix 34
34
B
249 259Right-handed alpha
Helix 35
35
B
262 272Right-handed alpha
Helix 36
36
B
279 289Right-handed alpha
Helix 37
37
B
318 322Right-handed 310
Helix 38
38
B
344 357Right-handed alpha
Helix 39
39
B
373 377Right-handed 310
Helix 40
40
B
386 406Right-handed alpha
Helix 41
41
B
423 427Right-handed 310
Helix 42
42
B
447 460Right-handed alpha
Helix 43
43
C
15 20Right-handed alpha
Helix 44
44
C
29 38Right-handed alpha
Helix 45
45
C
39 46Right-handed 310
Helix 46
46
C
53 68Right-handed alpha
Helix 47
47
C
78 83Right-handed alpha
Helix 48
48
C
92 109Right-handed alpha
Helix 49
49
C
123 131Right-handed alpha
Helix 50
50
C
132 134Right-handed 310
Helix 51
51
C
135 154Right-handed alpha
Helix 52
52
C
165 175Right-handed alpha
Helix 53
53
C
185 209Right-handed alpha
Helix 54
54
C
234 249Right-handed alpha
Helix 55
55
C
249 259Right-handed alpha
Helix 56
56
C
262 272Right-handed alpha
Helix 57
57
C
279 289Right-handed alpha
Helix 58
58
C
318 322Right-handed 310
Helix 59
59
C
344 357Right-handed alpha
Helix 60
60
C
373 377Right-handed 310
Helix 61
61
C
386 406Right-handed alpha
Helix 62
62
C
423 427Right-handed 310
Helix 63
63
C
447 460Right-handed alpha
Helix 64
64
D
15 20Right-handed alpha
Helix 65
65
D
29 38Right-handed alpha
Helix 66
66
D
39 46Right-handed 310
Helix 67
67
D
53 68Right-handed alpha
Helix 68
68
D
78 83Right-handed alpha
Helix 69
69
D
92 109Right-handed alpha
Helix 70
70
D
123 131Right-handed alpha
Helix 71
71
D
132 134Right-handed 310
Helix 72
72
D
135 154Right-handed alpha
Helix 73
73
D
165 175Right-handed alpha
Helix 74
74
D
185 210Right-handed alpha
Helix 75
75
D
211 215Right-handed 310
Helix 76
76
D
234 249Right-handed alpha
Helix 77
77
D
249 259Right-handed alpha
Helix 78
78
D
262 272Right-handed alpha
Helix 79
79
D
279 289Right-handed alpha
Helix 80
80
D
318 322Right-handed 310
Helix 81
81
D
344 357Right-handed alpha
Helix 82
82
D
373 377Right-handed 310
Helix 83
83
D
386 406Right-handed alpha
Helix 84
84
D
423 427Right-handed 310
Helix 85
85
D
447 460Right-handed alpha
Helix 86
86
E
15 20Right-handed alpha
Helix 87
87
E
29 38Right-handed alpha
Helix 88
88
E
39 46Right-handed 310
Helix 89
89
E
53 68Right-handed alpha
Helix 90
90
E
78 83Right-handed alpha
Helix 91
91
E
92 109Right-handed alpha
Helix 92
92
E
123 131Right-handed alpha
Helix 93
93
E
132 134Right-handed 310
Helix 94
94
E
135 154Right-handed alpha
Helix 95
95
E
165 175Right-handed alpha
Helix 96
96
E
185 209Right-handed alpha
Helix 97
97
E
211 215Right-handed 310
Helix 98
98
E
234 249Right-handed alpha
Helix 99
99
E
249 259Right-handed alpha
Helix 100
100
E
262 272Right-handed alpha
Helix 101
101
E
279 289Right-handed alpha
Helix 102
102
E
318 322Right-handed 310
Helix 103
103
E
343 357Right-handed alpha
Helix 104
104
E
373 377Right-handed 310
Helix 105
105
E
386 406Right-handed alpha
Helix 106
106
E
423 427Right-handed 310
Helix 107
107
E
447 460Right-handed alpha
Helix 108
108
F
15 20Right-handed alpha
Helix 109
109
F
29 38Right-handed alpha
Helix 110
110
F
39 46Right-handed 310
Helix 111
111
F
53 68Right-handed alpha
Helix 112
112
F
78 83Right-handed alpha
Helix 113
113
F
92 109Right-handed alpha
Helix 114
114
F
123 131Right-handed alpha
Helix 115
115
F
132 134Right-handed 310
Helix 116
116
F
135 154Right-handed alpha
Helix 117
117
F
165 175Right-handed alpha
Helix 118
118
F
185 209Right-handed alpha
Helix 119
119
F
234 249Right-handed alpha
Helix 120
120
F
249 258Right-handed alpha
Helix 121
121
F
262 272Right-handed alpha
Helix 122
122
F
279 289Right-handed alpha
Helix 123
123
F
318 322Right-handed 310
Helix 124
124
F
343 357Right-handed alpha
Helix 125
125
F
373 377Right-handed 310
Helix 126
126
F
386 406Right-handed alpha
Helix 127
127
F
423 427Right-handed 310
Helix 128
128
F
447 460Right-handed alpha
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There are 30 sheets in PDB entry 5FOO. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, CC, CD, CE, CF, A, DB, C, DD, EA, EB, EC, ED, EE, FA, FB, FC, FD, FE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
461 462anti-parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
410 416parallel
Strand 3
A
362 367parallel
Strand 4
A
293 297parallel
Strand 5
A
218 224parallel
Strand 6
A
159 164parallel
Strand 7
A
112 116parallel
Strand 8
A
72 76parallel
Strand 9
A
9 13parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 230first strand
Strand 2
A
302 305parallel
Strand 3
A
324 325anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 341first strand
Strand 2
A
331 334anti-parallel
Strand 3
E
309 313parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 437first strand
Strand 2
A
444 446anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
461 462anti-parallel
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There are 9 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 13first strand
Strand 2
B
410 416parallel
Strand 3
B
362 367parallel
Strand 4
B
293 297parallel
Strand 5
B
218 223parallel
Strand 6
B
159 164parallel
Strand 7
B
112 116parallel
Strand 8
B
72 76parallel
Strand 9
B
9 13parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 230first strand
Strand 2
B
302 305parallel
Strand 3
B
324 325anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 334first strand
Strand 2
B
339 341anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
435 437first strand
Strand 2
B
444 446anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 3first strand
Strand 2
C
461 462anti-parallel
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There are 9 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 13first strand
Strand 2
C
410 416parallel
Strand 3
C
362 367parallel
Strand 4
C
293 297parallel
Strand 5
C
218 224parallel
Strand 6
C
159 164parallel
Strand 7
C
112 116parallel
Strand 8
C
72 76parallel
Strand 9
C
9 13parallel
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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
228 230first strand
Strand 2
C
302 305parallel
Strand 3
C
324 325anti-parallel
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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
309 311first strand
Strand 2
D
331 334parallel
Strand 3
D
339 341anti-parallel
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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
332 334first strand
Strand 2
C
339 341anti-parallel
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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
435 437first strand
Strand 2
C
444 446anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 3first strand
Strand 2
D
461 462anti-parallel
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There are 9 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 13first strand
Strand 2
D
410 416parallel
Strand 3
D
362 367parallel
Strand 4
D
293 297parallel
Strand 5
D
218 223parallel
Strand 6
D
159 164parallel
Strand 7
D
112 116parallel
Strand 8
D
72 76parallel
Strand 9
D
9 13parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
228 230first strand
Strand 2
D
302 305parallel
Strand 3
D
324 325anti-parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
435 437first strand
Strand 2
D
444 446anti-parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2 3first strand
Strand 2
E
461 462anti-parallel
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There are 9 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 13first strand
Strand 2
E
410 416parallel
Strand 3
E
362 367parallel
Strand 4
E
294 297parallel
Strand 5
E
218 223parallel
Strand 6
E
159 164parallel
Strand 7
E
112 116parallel
Strand 8
E
72 76parallel
Strand 9
E
9 13parallel
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There are 3 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
228 230first strand
Strand 2
E
302 305parallel
Strand 3
E
324 325anti-parallel
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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
333 334first strand
Strand 2
E
339 340anti-parallel
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There are 2 strands in EE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
435 437first strand
Strand 2
E
444 446anti-parallel
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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2 3first strand
Strand 2
F
461 462anti-parallel
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There are 9 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
9 13first strand
Strand 2
F
410 416parallel
Strand 3
F
362 367parallel
Strand 4
F
293 297parallel
Strand 5
F
218 224parallel
Strand 6
F
159 164parallel
Strand 7
F
112 116parallel
Strand 8
F
72 76parallel
Strand 9
F
9 13parallel
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There are 3 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
228 230first strand
Strand 2
F
302 305parallel
Strand 3
F
324 325anti-parallel
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There are 2 strands in FD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
332 334first strand
Strand 2
F
339 341anti-parallel
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There are 2 strands in FE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
435 437first strand
Strand 2
F
444 446anti-parallel
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