Analysis of interatomic Contacts of Structural Units in PDB entry:
5FOY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FOY entry

There are 2 chains in PDB entry 5FOY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 368
B
 THR 28GLN 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5FOY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 5Right-handed 310
Helix 2
2
A
6 11Right-handed alpha
Helix 3
3
A
13 15Right-handed 310
Helix 4
4
A
50 53Right-handed 310
Helix 5
5
A
91 95Right-handed 310
Helix 6
6
A
142 145Right-handed 310
Helix 7
7
A
196 198Right-handed 310
Helix 8
8
A
203 211Right-handed alpha
Helix 9
9
A
245 257Right-handed alpha
Helix 10
10
A
272 274Right-handed 310
Helix 11
11
A
275 284Right-handed alpha
Helix 12
12
B
35 38Right-handed 310
Helix 13
13
B
127 129Right-handed 310
Helix 14
14
B
139 143Right-handed 310
Helix 15
15
B
184 189Right-handed 310
Helix 16
16
B
225 229Right-handed 310
Helix 17
17
B
242 244Right-handed 310
Helix 18
18
B
250 258Right-handed alpha
Helix 19
19
B
292 304Right-handed alpha
Helix 20
20
B
316 321Right-handed alpha
Helix 21
21
B
322 331Right-handed alpha
Helix 22
22
B
438 440Right-handed 310
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There are 15 sheets in PDB entry 5FOY. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, BE, BF, BG,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 23first strand
Strand 2
A
147 154anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
43 46anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
83 86anti-parallel
Strand 3
A
75 78anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 59first strand
Strand 2
A
65 69anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 100first strand
Strand 2
A
106 111anti-parallel
Strand 3
A
119 124anti-parallel
Strand 4
A
133 136anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 194first strand
Strand 2
A
213 230anti-parallel
Strand 3
A
311 325anti-parallel
Strand 4
A
337 350anti-parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 243first strand
Strand 2
A
296 304anti-parallel
Strand 3
A
358 364anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 260first strand
Strand 2
A
266 268anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 46first strand
Strand 2
B
191 198anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 56first strand
Strand 2
B
75 77parallel
Strand 3
B
168 173anti-parallel
Strand 4
B
117 122anti-parallel
Strand 5
B
104 107anti-parallel
Strand 6
B
94 98parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 56first strand
Strand 2
B
168 173anti-parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 240first strand
Strand 2
B
260 277anti-parallel
Strand 3
B
358 372anti-parallel
Strand 4
B
378 395anti-parallel
Strand 5
B
435 436anti-parallel
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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 290first strand
Strand 2
B
343 351anti-parallel
Strand 3
B
404 413anti-parallel
Strand 4
B
427 429anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 307first strand
Strand 2
B
313 315anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
422 423first strand
Strand 2
B
442 443anti-parallel
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