Analysis of interatomic Contacts of Structural Units in PDB entry:
5FP2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FP2 entry

There are 4 chains in PDB entry 5FP2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 32LEU 715
B
 LYS 32LEU 715
X
 UNK 4UNK 10
Z
 UNK 1UNK 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5FP2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 48Right-handed alpha
Helix 2
2
A
54 59Right-handed alpha
Helix 3
3
A
87 89Right-handed 310
Helix 4
4
A
124 126Right-handed 310
Helix 5
5
A
137 143Right-handed 310
Helix 6
6
B
42 47Right-handed alpha
Helix 7
7
B
54 59Right-handed alpha
Helix 8
8
B
87 89Right-handed 310
Helix 9
9
B
124 126Right-handed 310
Helix 10
10
B
137 143Right-handed 310
Helix 11
11
B
471 476Right-handed alpha
Helix 12
12
B
485 488Right-handed 310
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There are 10 sheets in PDB entry 5FP2. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
37 41anti-parallel
Strand 3
A
128 135anti-parallel
Strand 4
A
149 155anti-parallel
Strand 5
A
91 95parallel
Strand 6
A
98 99anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
81 83anti-parallel
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There are 23 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 173first strand
Strand 2
A
181 191anti-parallel
Strand 3
A
196 207anti-parallel
Strand 4
A
232 246anti-parallel
Strand 5
A
249 261anti-parallel
Strand 6
A
289 303anti-parallel
Strand 7
A
306 320anti-parallel
Strand 8
A
342 358anti-parallel
Strand 9
A
364 378anti-parallel
Strand 10
A
405 422anti-parallel
Strand 11
A
425 436anti-parallel
Strand 12
A
440 452anti-parallel
Strand 13
A
457 468anti-parallel
Strand 14
A
508 521anti-parallel
Strand 15
A
524 535anti-parallel
Strand 16
A
564 578anti-parallel
Strand 17
A
581 592anti-parallel
Strand 18
A
607 616anti-parallel
Strand 19
A
622 631anti-parallel
Strand 20
A
656 666anti-parallel
Strand 21
A
671 678anti-parallel
Strand 22
A
705 713anti-parallel
Strand 23
A
163 173anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 481first strand
Strand 2
A
499 500anti-parallel
Strand 3
A
556 557parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
539 540first strand
Strand 2
A
559 560anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
37 41anti-parallel
Strand 3
B
128 135anti-parallel
Strand 4
B
149 155anti-parallel
Strand 5
B
91 95parallel
Strand 6
B
98 99anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 66first strand
Strand 2
B
81 83anti-parallel
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There are 23 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 173first strand
Strand 2
B
181 191anti-parallel
Strand 3
B
196 207anti-parallel
Strand 4
B
232 246anti-parallel
Strand 5
B
249 261anti-parallel
Strand 6
B
289 303anti-parallel
Strand 7
B
306 321anti-parallel
Strand 8
B
341 358anti-parallel
Strand 9
B
363 378anti-parallel
Strand 10
B
405 422anti-parallel
Strand 11
B
425 436anti-parallel
Strand 12
B
440 452anti-parallel
Strand 13
B
457 468anti-parallel
Strand 14
B
508 521anti-parallel
Strand 15
B
524 535anti-parallel
Strand 16
B
564 578anti-parallel
Strand 17
B
581 591anti-parallel
Strand 18
B
607 617anti-parallel
Strand 19
B
622 631anti-parallel
Strand 20
B
656 666anti-parallel
Strand 21
B
671 678anti-parallel
Strand 22
B
705 713anti-parallel
Strand 23
B
163 173anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
497 500first strand
Strand 2
B
554 557parallel
Strand 3
B
545 547anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
539 540first strand
Strand 2
B
559 560anti-parallel
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