Analysis of interatomic Contacts of Structural Units in PDB entry:
5FPE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FPE entry

There are 2 chains in PDB entry 5FPE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4ASP 385
B
 GLY 4ASP 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5FPE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 58Right-handed alpha
Helix 2
2
A
62 64Right-handed 310
Helix 3
3
A
69 73Right-handed 310
Helix 4
4
A
80 87Right-handed alpha
Helix 5
5
A
88 90Right-handed 310
Helix 6
6
A
115 136Right-handed alpha
Helix 7
7
A
151 166Right-handed alpha
Helix 8
8
A
175 183Right-handed alpha
Helix 9
9
A
231 252Right-handed alpha
Helix 10
10
A
258 276Right-handed alpha
Helix 11
11
A
301 308Right-handed alpha
Helix 12
12
A
308 315Right-handed alpha
Helix 13
13
A
315 327Right-handed alpha
Helix 14
14
A
329 333Right-handed 310
Helix 15
15
A
340 344Right-handed 310
Helix 16
16
A
345 356Right-handed alpha
Helix 17
17
A
369 384Right-handed alpha
Helix 18
18
B
52 58Right-handed alpha
Helix 19
19
B
62 64Right-handed 310
Helix 20
20
B
69 73Right-handed 310
Helix 21
21
B
80 88Right-handed alpha
Helix 22
22
B
115 136Right-handed alpha
Helix 23
23
B
151 166Right-handed alpha
Helix 24
24
B
175 183Right-handed alpha
Helix 25
25
B
231 248Right-handed alpha
Helix 26
26
B
258 277Right-handed alpha
Helix 27
27
B
301 308Right-handed alpha
Helix 28
28
B
308 315Right-handed alpha
Helix 29
29
B
315 327Right-handed alpha
Helix 30
30
B
329 333Right-handed 310
Helix 31
31
B
340 344Right-handed 310
Helix 32
32
B
345 356Right-handed alpha
Helix 33
33
B
369 384Right-handed alpha
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There are 16 sheets in PDB entry 5FPE. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, BE, BF, BG, BH,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
15 22parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
15 22anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 174first strand
Strand 2
A
141 146parallel
Strand 3
A
6 10parallel
Strand 4
A
15 22anti-parallel
Strand 5
A
25 28parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 174first strand
Strand 2
A
141 146parallel
Strand 3
A
6 10parallel
Strand 4
A
15 22anti-parallel
Strand 5
A
38 39anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
42 44anti-parallel
Strand 3
A
66 67anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 97first strand
Strand 2
A
100 107anti-parallel
Strand 3
A
110 114anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 227first strand
Strand 2
A
207 215anti-parallel
Strand 3
A
195 202anti-parallel
Strand 4
A
335 339parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 290first strand
Strand 2
A
293 300anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 28first strand
Strand 2
B
15 22parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 39first strand
Strand 2
B
15 22anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 174first strand
Strand 2
B
141 146parallel
Strand 3
B
6 10parallel
Strand 4
B
15 22anti-parallel
Strand 5
B
25 28parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 174first strand
Strand 2
B
141 146parallel
Strand 3
B
6 10parallel
Strand 4
B
15 22anti-parallel
Strand 5
B
38 39anti-parallel
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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 51first strand
Strand 2
B
42 44anti-parallel
Strand 3
B
66 67anti-parallel
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There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 97first strand
Strand 2
B
100 107anti-parallel
Strand 3
B
110 114anti-parallel
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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 227first strand
Strand 2
B
207 215anti-parallel
Strand 3
B
195 202anti-parallel
Strand 4
B
335 339parallel
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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 290first strand
Strand 2
B
293 300anti-parallel
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