Analysis of interatomic Contacts of Structural Units in PDB entry:
5FPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5FPF entry

There are 4 chains in PDB entry 5FPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 952PHE 1110
B
 GLY 952PHE 1110
C
 ALA 1116GLU 1161
D
 ALA 1116GLU 1161
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5FPF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
962 975Right-handed alpha
Helix 2
2
A
1002 1019Right-handed alpha
Helix 3
3
A
1035 1043Right-handed alpha
Helix 4
4
A
1045 1049Right-handed 310
Helix 5
5
A
1064 1069Right-handed alpha
Helix 6
6
A
1070 1072Right-handed 310
Helix 7
7
A
1074 1078Right-handed 310
Helix 8
8
B
962 975Right-handed alpha
Helix 9
9
B
1002 1019Right-handed alpha
Helix 10
10
B
1035 1043Right-handed alpha
Helix 11
11
B
1045 1049Right-handed 310
Helix 12
12
B
1064 1070Right-handed alpha
Helix 13
13
B
1074 1078Right-handed 310
Helix 14
14
C
1143 1145Right-handed 310
Helix 15
15
D
1143 1145Right-handed 310
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There are 6 sheets in PDB entry 5FPF. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, A,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 957first strand
Strand 2
A
992 1001anti-parallel
Strand 3
C
1147 1157anti-parallel
Strand 4
A
1094 1102anti-parallel
Strand 5
A
1026 1031anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1059 1062first strand
Strand 2
C
1138 1141anti-parallel
Strand 3
C
1124 1127anti-parallel
Strand 4
A
1106 1108parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
954 957first strand
Strand 2
B
992 1001anti-parallel
Strand 3
D
1147 1157anti-parallel
Strand 4
B
1094 1102anti-parallel
Strand 5
B
1026 1031anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1059 1062first strand
Strand 2
D
1138 1141anti-parallel
Strand 3
D
1124 1127anti-parallel
Strand 4
B
1106 1108parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1130 1131first strand
Strand 2
C
1134 1135anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1130 1131first strand
Strand 2
D
1134 1135anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il