Analysis of interatomic Contacts of Structural Units in PDB entry:
5FPH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5FPH entry

There are 7 chains in PDB entry 5FPH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 15	ASN 413
B	ASP 15	ARG 412
C	ASP 15	ASN 413
D	ASN 14	ASN 413
E	ASN 14	ASN 413
F	ASN 13	ASN 413
G	ASN 14	ARG 412

There are127 helices in PDB entry 5FPH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	24	Right-handed alpha
Helix 2	AA2	A	25	27	Right-handed 310
Helix 3	AA3	A	35	49	Right-handed alpha
Helix 4	AA4	A	50	67	Right-handed alpha
Helix 5	AA5	A	81	90	Right-handed alpha
Helix 6	AA6	A	136	145	Right-handed alpha
Helix 7	AA7	A	146	149	Right-handed 310
Helix 8	AA8	A	161	174	Right-handed alpha
Helix 9	AA9	A	184	194	Right-handed alpha
Helix 10	AB1	A	204	221	Right-handed alpha
Helix 11	AB2	A	239	251	Right-handed alpha
Helix 12	AB3	A	252	254	Right-handed 310
Helix 13	AB4	A	255	263	Right-handed alpha
Helix 14	AB5	A	267	289	Right-handed alpha
Helix 15	AB6	A	302	320	Right-handed alpha
Helix 16	AB7	A	325	329	Right-handed 310
Helix 17	AB8	A	337	345	Right-handed alpha
Helix 18	AB9	A	347	351	Right-handed 310
Helix 19	AC1	A	359	375	Right-handed alpha
Helix 20	AC2	A	385	412	Right-handed alpha
Helix 21	AC3	B	16	26	Right-handed alpha
Helix 22	AC4	B	35	49	Right-handed alpha
Helix 23	AC5	B	50	67	Right-handed alpha
Helix 24	AC6	B	82	90	Right-handed alpha
Helix 25	AC7	B	136	144	Right-handed alpha
Helix 26	AC8	B	145	149	Right-handed 310
Helix 27	AC9	B	161	174	Right-handed alpha
Helix 28	AD1	B	184	196	Right-handed alpha
Helix 29	AD2	B	201	221	Right-handed alpha
Helix 30	AD3	B	239	251	Right-handed alpha
Helix 31	AD4	B	252	261	Right-handed alpha
Helix 32	AD5	B	267	289	Right-handed alpha
Helix 33	AD6	B	302	320	Right-handed alpha
Helix 34	AD7	B	323	333	Right-handed alpha
Helix 35	AD8	B	337	345	Right-handed alpha
Helix 36	AD9	B	360	375	Right-handed alpha
Helix 37	AE1	B	385	412	Right-handed alpha
Helix 38	AE2	C	16	26	Right-handed alpha
Helix 39	AE3	C	35	49	Right-handed alpha
Helix 40	AE4	C	50	67	Right-handed alpha
Helix 41	AE5	C	81	90	Right-handed alpha
Helix 42	AE6	C	138	144	Right-handed alpha
Helix 43	AE7	C	161	174	Right-handed alpha
Helix 44	AE8	C	184	194	Right-handed alpha
Helix 45	AE9	C	201	221	Right-handed alpha
Helix 46	AF1	C	239	251	Right-handed alpha
Helix 47	AF2	C	252	263	Right-handed alpha
Helix 48	AF3	C	267	289	Right-handed alpha
Helix 49	AF4	C	302	320	Right-handed alpha
Helix 50	AF5	C	325	332	Right-handed alpha
Helix 51	AF6	C	337	342	Right-handed alpha
Helix 52	AF7	C	343	345	Right-handed 310
Helix 53	AF8	C	346	350	Right-handed 310
Helix 54	AF9	C	359	375	Right-handed alpha
Helix 55	AG1	C	385	413	Right-handed alpha
Helix 56	AG2	D	15	24	Right-handed alpha
Helix 57	AG3	D	25	27	Right-handed 310
Helix 58	AG4	D	28	32	Right-handed 310
Helix 59	AG5	D	35	49	Right-handed alpha
Helix 60	AG6	D	50	67	Right-handed alpha
Helix 61	AG7	D	81	90	Right-handed alpha
Helix 62	AG8	D	139	145	Right-handed alpha
Helix 63	AG9	D	146	149	Right-handed 310
Helix 64	AH1	D	161	174	Right-handed alpha
Helix 65	AH2	D	184	195	Right-handed alpha
Helix 66	AH3	D	202	219	Right-handed alpha
Helix 67	AH4	D	238	251	Right-handed alpha
Helix 68	AH5	D	252	263	Right-handed alpha
Helix 69	AH6	D	267	289	Right-handed alpha
Helix 70	AH7	D	302	320	Right-handed alpha
Helix 71	AH8	D	323	331	Right-handed alpha
Helix 72	AH9	D	337	346	Right-handed alpha
Helix 73	AI1	D	358	375	Right-handed alpha
Helix 74	AI2	D	385	413	Right-handed alpha
Helix 75	AI3	E	15	26	Right-handed alpha
Helix 76	AI4	E	35	49	Right-handed alpha
Helix 77	AI5	E	50	67	Right-handed alpha
Helix 78	AI6	E	81	90	Right-handed alpha
Helix 79	AI7	E	139	144	Right-handed alpha
Helix 80	AI8	E	161	174	Right-handed alpha
Helix 81	AI9	E	184	195	Right-handed alpha
Helix 82	AJ1	E	202	221	Right-handed alpha
Helix 83	AJ2	E	239	251	Right-handed alpha
Helix 84	AJ3	E	252	263	Right-handed alpha
Helix 85	AJ4	E	267	289	Right-handed alpha
Helix 86	AJ5	E	302	320	Right-handed alpha
Helix 87	AJ6	E	323	334	Right-handed alpha
Helix 88	AJ7	E	337	343	Right-handed alpha
Helix 89	AJ8	E	347	351	Right-handed 310
Helix 90	AJ9	E	359	375	Right-handed alpha
Helix 91	AK1	E	385	413	Right-handed alpha
Helix 92	AK2	F	16	26	Right-handed alpha
Helix 93	AK3	F	35	49	Right-handed alpha
Helix 94	AK4	F	50	67	Right-handed alpha
Helix 95	AK5	F	81	90	Right-handed alpha
Helix 96	AK6	F	129	133	Right-handed 310
Helix 97	AK7	F	138	144	Right-handed alpha
Helix 98	AK8	F	161	174	Right-handed alpha
Helix 99	AK9	F	184	194	Right-handed alpha
Helix 100	AL1	F	201	220	Right-handed alpha
Helix 101	AL2	F	239	251	Right-handed alpha
Helix 102	AL3	F	252	263	Right-handed alpha
Helix 103	AL4	F	267	289	Right-handed alpha
Helix 104	AL5	F	303	320	Right-handed alpha
Helix 105	AL6	F	323	333	Right-handed alpha
Helix 106	AL7	F	337	345	Right-handed alpha
Helix 107	AL8	F	346	350	Right-handed 310
Helix 108	AL9	F	359	374	Right-handed alpha
Helix 109	AM1	F	385	413	Right-handed alpha
Helix 110	AM2	G	15	26	Right-handed alpha
Helix 111	AM3	G	28	32	Right-handed 310
Helix 112	AM4	G	35	49	Right-handed alpha
Helix 113	AM5	G	50	67	Right-handed alpha
Helix 114	AM6	G	81	90	Right-handed alpha
Helix 115	AM7	G	139	144	Right-handed alpha
Helix 116	AM8	G	145	149	Right-handed 310
Helix 117	AM9	G	161	174	Right-handed alpha
Helix 118	AN1	G	184	196	Right-handed alpha
Helix 119	AN2	G	201	219	Right-handed alpha
Helix 120	AN3	G	239	251	Right-handed alpha
Helix 121	AN4	G	252	263	Right-handed alpha
Helix 122	AN5	G	267	289	Right-handed alpha
Helix 123	AN6	G	302	320	Right-handed alpha
Helix 124	AN7	G	323	334	Right-handed alpha
Helix 125	AN8	G	337	343	Right-handed alpha
Helix 126	AN9	G	358	375	Right-handed alpha
Helix 127	AO1	G	385	412	Right-handed alpha

There are 7 sheets in PDB entry 5FPH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	115	first strand
Strand 2	A	122	127	anti-parallel
Strand 3	A	70	76	parallel
Strand 4	A	151	156	parallel
Strand 5	A	178	182	parallel
Strand 6	A	227	229	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	115	first strand
Strand 2	B	122	126	anti-parallel
Strand 3	B	70	75	parallel
Strand 4	B	151	156	parallel
Strand 5	B	177	182	parallel
Strand 6	B	227	229	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	115	first strand
Strand 2	C	122	126	anti-parallel
Strand 3	C	70	76	parallel
Strand 4	C	151	156	parallel
Strand 5	C	177	182	parallel
Strand 6	C	227	229	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	115	first strand
Strand 2	D	122	126	anti-parallel
Strand 3	D	70	76	parallel
Strand 4	D	151	155	parallel
Strand 5	D	178	182	parallel
Strand 6	D	227	229	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	115	first strand
Strand 2	E	122	126	anti-parallel
Strand 3	E	70	76	parallel
Strand 4	E	151	156	parallel
Strand 5	E	178	182	parallel
Strand 6	E	227	229	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	112	115	first strand
Strand 2	F	122	126	anti-parallel
Strand 3	F	70	76	parallel
Strand 4	F	151	156	parallel
Strand 5	F	178	182	parallel
Strand 6	F	227	229	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	112	115	first strand
Strand 2	G	122	126	anti-parallel
Strand 3	G	70	75	parallel
Strand 4	G	151	155	parallel
Strand 5	G	178	182	parallel
Strand 6	G	227	229	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5FPH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5FPH